Magnesium in PDB 8efv: Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor

All present enzymatic activity of Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor:
3.6.4.12;

The binding sites of Magnesium atom in the Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor (pdb code 8efv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor, PDB code: 8efv:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:55.5 occ:1.00 OE2 D:GLU98 2.8 63.4 1.0 CD D:GLU98 3.5 65.0 1.0 CG C:PRO154 3.7 24.0 1.0 CG D:GLU98 4.1 61.0 1.0 OE1 D:GLU98 4.3 64.0 1.0 CD C:PRO154 4.6 24.8 1.0 CB C:PRO154 4.7 21.5 1.0 CG2 D:THR146 4.8 60.7 1.0 O3G D:AGS400 4.9 42.0 1.0

Magnesium binding site 2 out of 4 in the Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:40.1 occ:1.00 OG1 C:THR146 2.9 22.4 1.0 CE1 C:HIS100 3.3 16.5 1.0 CG C:GLU98 3.5 19.0 1.0 N C:THR146 3.7 14.7 1.0 CB C:THR146 3.9 9.3 1.0 CG2 C:THR146 3.9 11.4 1.0 ND1 C:HIS100 4.1 19.4 1.0 NE2 C:HIS100 4.2 12.1 1.0 OG1 C:THR145 4.4 22.8 1.0 OE2 C:GLU98 4.4 23.6 1.0 CA C:THR146 4.4 9.0 1.0 CE2 B:TYR111 4.4 12.3 1.0 CG B:PRO154 4.4 6.2 1.0 CA C:THR145 4.5 5.6 1.0 S1G C:AGS400 4.5 38.9 1.0 CB C:GLU98 4.5 14.5 1.0 CD C:GLU98 4.5 22.6 1.0 C C:THR145 4.5 13.6 1.0 CA C:GLU98 4.7 10.8 1.0 CD2 B:TYR111 4.9 5.9 1.0

Magnesium binding site 3 out of 4 in the Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:37.3 occ:1.00 CG B:GLU98 3.3 16.3 1.0 OE2 B:GLU98 3.5 21.7 1.0 O3G B:AGS400 3.8 27.0 1.0 CD B:GLU98 3.9 21.9 1.0 OG1 B:THR146 4.0 19.4 1.0 S1G B:AGS400 4.2 47.2 1.0 CG2 B:THR146 4.2 14.9 1.0 N B:THR146 4.2 14.9 1.0 CB B:GLU98 4.4 11.8 1.0 CA B:THR145 4.4 5.6 1.0 CA B:GLU98 4.4 2.3 1.0 CE2 A:TYR111 4.4 12.5 1.0 CE1 B:HIS100 4.5 11.4 1.0 PG B:AGS400 4.5 29.8 1.0 N B:GLU98 4.6 7.3 1.0 CD2 A:TYR111 4.6 8.4 1.0 C B:THR145 4.6 14.7 1.0 CB B:THR146 4.7 2.9 1.0 O2G B:AGS400 4.7 37.8 1.0 O B:ALA144 4.8 20.6 1.0 CG A:PRO154 4.8 10.1 1.0

Magnesium binding site 4 out of 4 in the Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:33.8 occ:1.00 OD1 A:ASP97 2.0 34.2 1.0 CG A:ASP97 2.8 32.8 1.0 OD2 A:ASP97 3.0 37.1 1.0 OE2 A:GLU98 3.5 36.4 1.0 O2B A:ADP400 3.7 13.3 1.0 CB A:ALA144 3.8 16.6 1.0 CE A:LYS51 3.8 14.6 1.0 O A:ALA144 4.2 20.1 1.0 N A:GLU98 4.2 22.9 1.0 CB A:ASP97 4.2 20.6 1.0 CD A:GLU98 4.3 40.0 1.0 C A:ALA144 4.3 13.6 1.0 NZ A:LYS51 4.5 24.0 1.0 CG A:GLU98 4.5 34.8 1.0 OG1 A:THR52 4.6 20.7 1.0 CA A:ASP97 4.6 12.0 1.0 CA A:ALA144 4.7 7.6 1.0 N A:THR145 4.8 17.9 1.0 C A:ASP97 4.9 21.6 1.0 CB A:LYS51 5.0 17.2 1.0

Z.F.Shen, A.D.Rish, T.M.Fu. Structure of Single Homo-Hexameric Holliday Junction Atp-Dependent Dna Helicase Ruvb Motor To Be Published.