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Magnesium in PDB 8efy: Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors

Enzymatic activity of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors

All present enzymatic activity of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors:
3.6.4.12;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors (pdb code 8efy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors, PDB code: 8efy:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 8efy

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Magnesium binding site 1 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:32.4
occ:1.00
 OD1 A:ASP97 2.0 30.0 1.0
OE2 A:GLU98 2.0 31.6 1.0
CG A:ASP97 2.7 28.4 1.0
OD2 A:ASP97 2.9 27.8 1.0
CD A:GLU98 3.2 33.4 1.0
CB A:ALA144 3.7 11.8 1.0
O A:ALA144 3.8 20.4 1.0
N A:GLU98 3.9 14.2 1.0
CG A:GLU98 4.0 26.4 1.0
C A:ALA144 4.0 12.8 1.0
CE A:LYS51 4.0 16.9 1.0
CB A:ASP97 4.0 22.5 1.0
OE1 A:GLU98 4.1 34.1 1.0
CA A:ASP97 4.4 6.5 1.0
O1B A:ADP400 4.4 18.3 1.0
N A:THR145 4.4 11.5 1.0
C A:ASP97 4.5 16.4 1.0
CA A:ALA144 4.5 0.0 1.0
CD A:LYS51 4.6 7.1 1.0
CA A:GLU98 4.7 15.0 1.0
CA A:THR145 4.7 3.9 1.0
CB A:GLU98 4.9 9.9 1.0

Magnesium binding site 2 out of 8 in 8efy

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Magnesium binding site 2 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:29.7
occ:1.00
 OE2 B:GLU98 2.9 36.0 1.0
CG B:GLU98 3.5 20.0 1.0
O3G B:AGS401 3.5 8.7 1.0
CD B:GLU98 3.6 36.2 1.0
S1G B:AGS401 4.2 50.2 1.0
CG2 B:THR146 4.2 17.8 1.0
N B:THR146 4.3 23.2 1.0
PG B:AGS401 4.5 23.7 1.0
CB B:THR146 4.5 12.7 1.0
CE2 A:TYR111 4.6 10.9 1.0
N B:GLU98 4.6 11.9 1.0
CD2 A:TYR111 4.6 12.4 1.0
CA B:GLU98 4.6 6.4 1.0
CB B:GLU98 4.6 0.0 1.0
CA B:THR145 4.7 0.2 1.0
OE1 B:GLU98 4.7 46.4 1.0
CE1 B:HIS100 4.7 31.4 1.0
O B:ALA144 4.8 27.1 1.0
C B:THR145 4.8 8.7 1.0
CG A:PRO154 5.0 5.8 1.0

Magnesium binding site 3 out of 8 in 8efy

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Magnesium binding site 3 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:20.0
occ:1.00
 OE1 C:GLU98 2.1 27.6 1.0
CE1 C:HIS100 2.9 8.7 1.0
OG1 C:THR146 3.3 23.4 1.0
CD C:GLU98 3.3 29.1 1.0
CB C:THR146 3.7 0.0 1.0
ND1 C:HIS100 3.7 11.4 1.0
N C:THR146 3.8 10.2 1.0
NE2 C:HIS100 3.8 10.2 1.0
OE2 C:GLU98 4.1 28.3 1.0
CG C:GLU98 4.3 15.2 1.0
CA C:THR146 4.3 0.0 1.0
OE1 B:GLU108 4.4 39.6 1.0
CE2 B:TYR111 4.4 15.6 1.0
CG B:PRO154 4.5 0.0 1.0
OE2 B:GLU108 4.6 35.3 1.0
OG1 C:THR145 4.6 12.9 1.0
CB C:GLU98 4.6 5.6 1.0
C C:THR145 4.7 15.7 1.0
CA C:THR145 4.8 7.8 1.0
CA C:GLU98 4.9 0.5 1.0
CG C:HIS100 4.9 0.8 1.0
CD B:GLU108 4.9 31.7 1.0
CD2 B:TYR111 4.9 15.4 1.0
CD2 C:HIS100 4.9 11.5 1.0
CG2 C:THR146 4.9 12.3 1.0

Magnesium binding site 4 out of 8 in 8efy

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Magnesium binding site 4 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:59.6
occ:1.00
 OE1 D:GLU98 3.4 63.5 1.0
CG2 D:THR146 4.2 55.5 1.0
O2G D:AGS400 4.5 66.0 1.0
CD D:GLU98 4.5 62.8 1.0
OD1 D:ASP97 4.6 51.9 1.0
CG C:PRO154 4.8 32.2 1.0
CB D:PRO47 5.0 46.3 1.0

Magnesium binding site 5 out of 8 in 8efy

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Magnesium binding site 5 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg401

b:48.3
occ:1.00
 OD1 I:ASP97 1.9 28.2 1.0
OD2 I:ASP97 2.0 30.7 1.0
CG I:ASP97 2.2 30.8 1.0
CB I:ASP97 3.6 21.8 1.0
OG1 I:THR52 3.6 22.3 1.0
O1B I:ADP400 3.7 15.6 1.0
CB I:ALA144 3.7 15.7 1.0
OE2 I:GLU98 3.8 30.7 1.0
CA I:ASP97 4.3 6.5 1.0
CZ I:PHE95 4.4 6.0 1.0
CE I:LYS51 4.6 17.2 1.0
N I:GLU98 4.6 18.6 1.0
O I:ALA144 4.7 21.9 1.0
CB I:LYS51 4.7 12.7 1.0
CE2 I:PHE95 4.8 14.3 1.0
C I:ALA144 4.9 12.8 1.0
C I:ASP97 4.9 17.8 1.0
N I:THR52 4.9 9.0 1.0
CA I:ALA144 4.9 0.3 1.0
CD I:GLU98 4.9 36.6 1.0
CB I:THR52 5.0 13.8 1.0

Magnesium binding site 6 out of 8 in 8efy

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Magnesium binding site 6 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg401

b:40.4
occ:1.00
 OE2 J:GLU98 2.9 32.6 1.0
CG J:GLU98 3.5 15.6 1.0
CD J:GLU98 3.5 34.1 1.0
O3G J:AGS400 3.6 5.2 1.0
S1G J:AGS400 4.0 47.9 1.0
CG2 J:THR146 4.2 17.2 1.0
N J:THR146 4.2 24.0 1.0
PG J:AGS400 4.4 26.8 1.0
CB J:THR146 4.5 12.7 1.0
CA J:THR145 4.6 0.0 1.0
CB J:GLU98 4.7 0.0 1.0
OE1 J:GLU98 4.7 48.2 1.0
CA J:GLU98 4.7 0.0 1.0
N J:GLU98 4.7 10.1 1.0
CE1 J:HIS100 4.7 31.9 1.0
CE2 I:TYR111 4.8 16.8 1.0
O J:ALA144 4.8 27.1 1.0
C J:THR145 4.8 11.0 1.0
CD2 I:TYR111 4.8 19.2 1.0
CG I:PRO154 4.9 8.8 1.0

Magnesium binding site 7 out of 8 in 8efy

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Magnesium binding site 7 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg401

b:12.8
occ:1.00
 OE1 K:GLU98 2.3 31.9 1.0
CE1 K:HIS100 2.9 34.0 1.0
OG1 K:THR146 3.0 32.2 1.0
CD K:GLU98 3.4 29.2 1.0
CB K:THR146 3.5 0.0 1.0
N K:THR146 3.7 14.3 1.0
ND1 K:HIS100 3.7 37.4 1.0
NE2 K:HIS100 3.9 30.6 1.0
OE2 K:GLU98 4.2 26.6 1.0
CA K:THR146 4.2 0.0 1.0
CG K:GLU98 4.4 19.2 1.0
CG J:PRO154 4.5 0.0 1.0
CE2 J:TYR111 4.6 18.1 1.0
OG1 K:THR145 4.6 16.8 1.0
CB K:GLU98 4.6 6.6 1.0
C K:THR145 4.7 19.7 1.0
CA K:THR145 4.8 10.7 1.0
CG2 K:THR146 4.8 6.2 1.0
CA K:GLU98 4.9 4.5 1.0
CG K:HIS100 4.9 28.2 1.0
N K:ARG147 5.0 4.1 1.0
CD2 K:HIS100 5.0 34.5 1.0

Magnesium binding site 8 out of 8 in 8efy

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Magnesium binding site 8 out of 8 in the Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motors within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg401

b:59.3
occ:1.00
 S1G L:AGS400 2.9 70.4 1.0
O2G L:AGS400 3.2 62.4 1.0
PG L:AGS400 3.3 80.3 1.0
O3G L:AGS400 3.4 65.1 1.0
CB L:PRO47 3.4 47.3 1.0
CA L:PRO47 4.1 50.7 1.0
N L:GLY48 4.4 54.2 1.0
C L:PRO47 4.7 53.6 1.0
CG L:PRO47 4.8 48.5 1.0
O3B L:AGS400 4.9 67.2 1.0
CG2 L:THR146 4.9 55.0 1.0

Reference:

A.D.Rish, Z.F.Shen, T.M.Fu. Structure of Double Homo-Hexameric Aaa+ Atpase Ruvb Motor Binding with Dna Substrate To Be Published.
Page generated: Fri Aug 15 03:45:52 2025

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