Magnesium in PDB 8eh9: Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2)

Enzymatic activity of Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2)

All present enzymatic activity of Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2):
2.7.7.6;

Other elements in 8eh9:

The structure of Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2) (pdb code 8eh9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2), PDB code: 8eh9:

Magnesium binding site 1 out of 1 in 8eh9

Go back to

Magnesium Binding Sites List in 8eh9

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of His-Elemental Paused Elongation Complex with A Folded Tl and A Rotated Rh-Fl (2) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
R:Mg101 b:21.9 occ:1.00	O3'	R:C18	2.0	18.4	1.0
	OD1	J:ASP460	2.1	16.3	1.0
	O5'	R:U19	2.2	23.3	1.0
	OD2	J:ASP460	2.2	16.3	1.0
	CG	J:ASP460	2.4	16.3	1.0
	P	R:U19	2.6	23.3	1.0
	O2'	R:C18	3.0	18.4	1.0
	C3'	R:C18	3.2	18.4	1.0
	OP1	R:U19	3.2	23.3	1.0
	C5'	R:U19	3.3	23.3	1.0
	NH2	J:ARG425	3.5	15.4	1.0
	OD1	J:ASP462	3.5	17.6	1.0
	C2'	R:C18	3.6	18.4	1.0
	C4'	R:U19	3.6	23.3	1.0
	O4'	R:U19	3.7	23.3	1.0
	OD2	J:ASP462	3.7	17.6	1.0
	OP2	R:U19	3.8	23.3	1.0
	CB	J:ASP460	3.9	16.3	1.0
	CG	J:ASP462	4.0	17.6	1.0
	C4'	R:C18	4.1	18.4	1.0
	N	J:ASP460	4.4	16.3	1.0
	CA	J:ASP460	4.7	16.3	1.0
	CZ	J:ARG425	4.7	15.4	1.0
	O	J:ASN458	4.8	16.8	1.0
	O	J:ASP460	4.9	16.3	1.0
	OD2	J:ASP464	4.9	14.6	1.0
	C1'	R:C18	4.9	18.4	1.0
	C1'	R:U19	5.0	23.3	1.0
	C5'	R:C18	5.0	18.4	1.0

Reference:

J.Y.Kang, T.V.Mishanina, Y.Bao, J.Chen, E.Llewellyn, J.Liu, S.A.Darst, R.Landick. An Ensemble of Interconverting Conformations of the Elemental Paused Transcription Complex Creates Regulatory Options. Proc.Natl.Acad.Sci.Usa V. 120 45120 2023.
ISSN: ESSN 1091-6490
PubMed: 36795753
DOI: 10.1073/PNAS.2215945120

Page generated: Fri Aug 15 03:46:15 2025

Last articles

Mg in 8H53
Mg in 8H68
Mg in 8H5Y
Mg in 8H4P
Mg in 8H5M
Mg in 8H4G
Mg in 8H4F
Mg in 8H4D
Mg in 8H4E
Mg in 8H4C

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy