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Magnesium in PDB 8f1s: A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in A-Orientation

Protein crystallography data

The structure of A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in A-Orientation, PDB code: 8f1s was solved by E.N.Ogbonna, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.33 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 25.03, 41.458, 64.004, 90, 90, 90
R / Rfree (%) 26 / 30.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in A-Orientation (pdb code 8f1s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in A-Orientation, PDB code: 8f1s:

Magnesium binding site 1 out of 1 in 8f1s

Go back to Magnesium Binding Sites List in 8f1s
Magnesium binding site 1 out of 1 in the A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in A-Orientation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in A-Orientation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg102

b:55.7
occ:1.00
O B:HOH208 2.3 54.3 1.0
O B:HOH202 2.4 44.9 1.0
OP1 B:DA6 4.6 48.6 1.0
OP2 B:DA7 4.8 42.4 1.0

Reference:

E.N.Ogbonna, A.Paul, A.Faharat, J.R.Terrell, V.Ogbonna, D.W.Boykin, W.D.Wilson. X-Ray Structure Characterization of the Selective Recognition of at Base Pair Sequences Acs Bio Med Chem Au 2023.
ISSN: ESSN 2694-2437
Page generated: Fri Oct 4 01:35:53 2024

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