Magnesium in PDB 8f1v: A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in B-Orientation

The structure of A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in B-Orientation, PDB code: 8f1v was solved by E.N.Ogbonna, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.33 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.03, 41.458, 64.004, 90, 90, 90
R / Rfree (%)	27.7 / 32.5

The binding sites of Magnesium atom in the A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in B-Orientation (pdb code 8f1v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in B-Orientation, PDB code: 8f1v:

Magnesium binding site 1 out of 1 in the A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in B-Orientation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Benzimidazole (DB1476) Sequence-Specific Recognition of 5'- Cgcaaaaaagcg-3' in B-Orientation within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:46.9 occ:1.00 OP1 B:DA6 4.4 42.8 1.0 OP2 B:DA7 4.8 41.7 1.0 OP2 B:DA6 4.9 43.5 1.0 P B:DA6 4.9 45.4 1.0

E.N.Ogbonna, A.Paul, A.Faharat, J.R.Terrell, V.Ogbonna, D.W.Boykin, W.D.Wilson. X-Ray Structure Characterization of the Selective Recognition of at Base Pair Sequences Acs Bio Med Chem Au 2023.
ISSN: ESSN 2694-2437