Magnesium in PDB 8zi0: Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1

Enzymatic activity of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1

All present enzymatic activity of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1 (pdb code 8zi0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1, PDB code: 8zi0:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8zi0

Go back to

Magnesium Binding Sites List in 8zi0

Magnesium binding site 1 out of 4 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg602 b:112.2 occ:1.00	O1B	A:ATP601	2.2	113.9	1.0
	O3G	A:ATP601	2.4	120.1	1.0
	O3B	A:ATP601	3.1	118.1	1.0
	PB	A:ATP601	3.2	124.4	1.0
	PG	A:ATP601	3.3	118.5	1.0
	O2G	A:ATP601	4.0	106.1	1.0
	O2B	A:ATP601	4.2	116.7	1.0
	O3A	A:ATP601	4.4	115.1	1.0
	O1G	A:ATP601	4.6	112.6	1.0
	CG	A:ARG172	4.6	107.1	1.0

Magnesium binding site 2 out of 4 in 8zi0

Go back to

Magnesium Binding Sites List in 8zi0

Magnesium binding site 2 out of 4 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg602 b:173.6 occ:1.00	O2B	B:ATP601	2.4	166.1	1.0
	O3G	B:ATP601	2.7	165.3	1.0
	O3B	B:ATP601	2.7	167.7	1.0
	PB	B:ATP601	3.0	175.7	1.0
	NE2	B:GLN201	3.2	109.6	1.0
	PG	B:ATP601	3.3	170.8	1.0
	OE1	B:GLN201	3.4	117.4	1.0
	CD	B:GLN201	3.7	112.0	1.0
	O1B	B:ATP601	3.8	166.0	1.0
	O2G	B:ATP601	3.9	162.5	1.0
	OG1	B:THR177	4.1	92.1	1.0
	OD1	B:ASP262	4.3	119.7	1.0
	O3A	B:ATP601	4.4	166.3	1.0
	O1G	B:ATP601	4.6	162.3	1.0

Magnesium binding site 3 out of 4 in 8zi0

Go back to

Magnesium Binding Sites List in 8zi0

Magnesium binding site 3 out of 4 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Mg601 b:115.8 occ:1.00	OG1	C:THR177	1.9	94.7	1.0
	O3G	C:ATP602	2.0	101.2	1.0
	O2G	C:ATP602	2.2	100.6	1.0
	OD1	C:ASP262	2.4	110.6	1.0
	PG	C:ATP602	2.6	119.8	1.0
	CG	C:ASP262	3.2	110.2	1.0
	CB	C:THR177	3.3	81.1	1.0
	O3B	C:ATP602	3.4	99.6	1.0
	OD2	C:ASP262	3.6	112.1	1.0
	O	C:ASP262	3.8	109.5	1.0
	O1G	C:ATP602	3.8	100.8	1.0
	CG2	C:THR177	4.1	76.2	1.0
	NE2	C:GLN201	4.1	96.6	1.0
	CA	C:THR177	4.1	73.7	1.0
	OD2	C:ASP263	4.3	115.3	1.0
	N	C:THR177	4.4	87.1	1.0
	CB	C:ASP262	4.5	101.3	1.0
	C	C:ASP262	4.6	105.6	1.0
	CG	C:ASP263	4.7	112.9	1.0
	CD1	C:ILE330	4.7	80.5	1.0
	CA	C:ASP262	4.7	100.4	1.0
	OD1	C:ASP263	4.7	109.0	1.0
	CD	C:GLN201	4.8	96.4	1.0
	OH	C:TYR196	4.9	79.3	1.0
	PB	C:ATP602	5.0	107.3	1.0

Magnesium binding site 4 out of 4 in 8zi0

Go back to

Magnesium Binding Sites List in 8zi0

Magnesium binding site 4 out of 4 in the Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F1- Atpase Rotary Subunits Gamma and Epsilon and Novel Compound Targets - Conformation 1 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg501 b:128.4 occ:1.00	O3B	D:ADP502	2.1	109.0	1.0
	NZ	D:LYS154	2.6	90.9	1.0
	PB	D:ADP502	2.9	117.5	1.0
	O2B	D:ADP502	3.0	105.5	1.0
	O1B	D:ADP502	3.8	108.7	1.0
	CE	D:LYS154	3.9	91.5	1.0
	CA	D:ALA150	4.0	98.5	1.0
	N	D:GLY151	4.1	87.5	1.0
	O3A	D:ADP502	4.3	105.1	1.0
	C	D:ALA150	4.5	95.5	1.0
	OE2	D:GLU180	4.6	112.4	1.0
	CB	A:SER348	4.6	81.6	1.0
	CD1	D:TYR302	4.6	102.4	1.0
	O	D:GLY149	4.7	117.7	1.0
	CB	D:ALA150	4.7	97.4	1.0
	NH1	A:ARG377	4.7	99.9	1.0
	CE1	D:TYR302	4.7	99.2	1.0
	N	D:ALA150	4.8	102.9	1.0
	C	D:GLY149	5.0	109.8	1.0
	CD	D:LYS154	5.0	93.2	1.0

Reference:

K.C.M.Le, C.F.Wong, V.Muller, G.Gruber. Cryo-Em Reveals Transition States of the Acinetobacter Baumannii F 1 -Atpase Rotary Subunits Gamma and Epsilon , Unveiling Novel Compound Targets. Faseb J. V. 38 70131 2024.
ISSN: ESSN 1530-6860
PubMed: 39467208
DOI: 10.1096/FJ.202401629R

Page generated: Wed Nov 27 18:53:02 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy