Magnesium in PDB 9d8a: Structure of Rhizopus Azygosporus Kinase in Complex with Gdp and Mg

The structure of Structure of Rhizopus Azygosporus Kinase in Complex with Gdp and Mg, PDB code: 9d8a was solved by G.M.Wimberly-Gard, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.417, 66.46, 73.703, 90, 90, 90
R / Rfree (%)	16.9 / 23.7

The binding sites of Magnesium atom in the Structure of Rhizopus Azygosporus Kinase in Complex with Gdp and Mg (pdb code 9d8a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Rhizopus Azygosporus Kinase in Complex with Gdp and Mg, PDB code: 9d8a:

Magnesium binding site 1 out of 1 in the Structure of Rhizopus Azygosporus Kinase in Complex with Gdp and Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Rhizopus Azygosporus Kinase in Complex with Gdp and Mg within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg5002 b:24.7 occ:0.85 O A:HOH5112 2.0 27.9 1.0 OG A:SER17 2.0 27.1 1.0 O A:HOH5152 2.0 30.4 1.0 O A:HOH5155 2.1 27.6 1.0 O3B A:GDP5001 2.1 21.1 1.0 O A:HOH5110 2.1 25.0 1.0 CB A:SER17 3.1 25.3 1.0 PB A:GDP5001 3.3 21.0 1.0 O2B A:GDP5001 3.5 20.5 1.0 O A:HOH5153 3.7 47.9 1.0 N A:SER17 4.0 20.4 1.0 O A:HOH5180 4.1 42.2 1.0 CA A:SER17 4.1 23.2 1.0 O2A A:GDP5001 4.1 21.3 1.0 OD1 A:ASP61 4.1 33.8 1.0 CE1 A:HIS106 4.2 24.8 1.0 OD2 A:ASP61 4.3 35.1 1.0 O A:HOH5184 4.4 50.8 1.0 O1B A:GDP5001 4.4 19.4 1.0 O3A A:GDP5001 4.4 21.3 1.0 O A:HOH5179 4.4 55.4 1.0 PA A:GDP5001 4.6 22.7 1.0 O A:HOH5181 4.6 19.2 1.0 NE2 A:HIS106 4.6 24.1 1.0 CG A:ASP61 4.6 33.4 1.0 O1A A:GDP5001 4.8 21.9 1.0 CG2 A:THR108 5.0 22.5 1.0 NH2 A:ARG103 5.0 22.8 1.0

G.M.Wimberly-Gard, S.Shuman. Structure of Rhizopus Azygosporus Kinase in Complex with Gdp and Mg To Be Published.