Magnesium in PDB 9dxm: Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 2-1)

The binding sites of Magnesium atom in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 2-1) (pdb code 9dxm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 2-1), PDB code: 9dxm:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 2-1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 2-1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:133.1 occ:1.00 O2B B:GTP201 2.0 148.2 1.0 O1G B:GTP201 2.3 163.8 1.0 O3G B:GTP201 2.5 143.1 1.0 O2A B:GTP201 2.5 158.9 1.0 OG1 B:THR26 2.6 136.0 1.0 HB B:THR26 2.7 136.7 1.0 PG B:GTP201 2.7 157.6 1.0 OG1 B:THR44 2.7 136.2 1.0 H B:THR26 3.0 136.7 1.0 PB B:GTP201 3.0 152.3 1.0 HB B:THR44 3.1 138.5 1.0 CB B:THR26 3.1 137.2 1.0 O3B B:GTP201 3.2 150.1 1.0 H B:THR44 3.3 147.4 1.0 HG1 B:THR26 3.3 136.4 1.0 CB B:THR44 3.4 136.2 1.0 HG1 B:THR44 3.5 139.3 1.0 PA B:GTP201 3.5 166.3 1.0 O3A B:GTP201 3.7 158.6 1.0 N B:THR26 3.7 136.5 1.0 O B:ILE42 3.8 160.3 1.0 O1A B:GTP201 3.9 147.1 1.0 N B:THR44 4.0 148.3 1.0 HB2 B:LYS25 4.0 135.2 1.0 CA B:THR26 4.0 136.8 1.0 O2G B:GTP201 4.1 154.7 1.0 HG21 B:THR26 4.2 135.9 1.0 CG2 B:THR26 4.3 135.1 1.0 O1B B:GTP201 4.3 149.2 1.0 CA B:THR44 4.3 140.2 1.0 HE2 B:LYS25 4.4 131.5 1.0 HG21 B:THR44 4.5 133.2 1.0 HA B:THR26 4.6 137.0 1.0 CG2 B:THR44 4.6 131.3 1.0 HE1 B:TYR41 4.6 159.1 1.0 H B:LYS25 4.7 141.3 1.0 HA B:ALA43 4.7 154.8 1.0 HZ3 B:LYS25 4.7 138.8 1.0 HA B:THR44 4.7 142.2 1.0 OD2 B:ASP67 4.7 137.7 1.0 HZ2 B:LYS25 4.7 138.2 1.0 HG23 B:THR26 4.8 135.6 1.0 C B:LYS25 4.8 135.9 1.0 CB B:LYS25 4.9 133.6 1.0 H B:THR27 4.9 141.0 1.0 HG22 B:THR26 4.9 133.8 1.0 O5' B:GTP201 5.0 173.0 1.0 C B:ILE42 5.0 158.6 1.0

H.Y.J.Fung, S.R.Mittal, A.B.Niesman, J.Jiou, B.Shakya, T.Yoshizawa, A.E.Cansizoglu, M.P.Rout, Y.M.Chook. Phosphate-Dependent Nuclear Export Via A Non-Classical Nes Class Recognized By Exportin MSN5 Nat Commun 2025.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-025-57752-3