Magnesium in PDB 9dz6: Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 3-1)

The binding sites of Magnesium atom in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 3-1) (pdb code 9dz6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 3-1), PDB code: 9dz6:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 3-1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Yeast Exportin MSN5 Bound to Rangtp and PHO4 (Not Modeled) (State 3-1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:149.6 occ:1.00 O1G B:GTP201 1.8 165.7 1.0 O1B B:GTP201 1.8 159.5 1.0 OG1 B:THR44 2.0 150.6 1.0 HG1 B:THR44 2.1 152.7 1.0 OG1 B:THR26 2.2 149.2 1.0 HG21 B:THR44 2.5 153.4 1.0 HG1 B:THR26 2.6 148.3 1.0 H B:THR44 2.6 158.8 1.0 PG B:GTP201 2.7 161.9 1.0 O3G B:GTP201 2.8 156.5 1.0 CG2 B:THR44 2.9 151.8 1.0 CB B:THR44 2.9 151.2 1.0 HG22 B:THR44 2.9 150.5 1.0 PB B:GTP201 3.0 166.1 1.0 O3B B:GTP201 3.4 156.9 1.0 CB B:THR26 3.4 150.4 1.0 N B:THR44 3.4 159.7 1.0 HB B:THR26 3.4 149.7 1.0 H B:THR26 3.5 149.1 1.0 HB B:THR44 3.6 150.8 1.0 O3A B:GTP201 3.7 169.9 1.0 CA B:THR44 3.8 156.3 1.0 HG23 B:THR44 3.8 152.8 1.0 O2G B:GTP201 4.1 162.0 1.0 HB2 B:LYS25 4.1 145.3 1.0 HE2 B:LYS25 4.1 141.9 1.0 N B:THR26 4.1 149.1 1.0 HG22 B:THR26 4.1 147.6 1.0 O2A B:GTP201 4.1 162.6 1.0 HA B:ALA43 4.2 163.4 1.0 HA B:ALA69 4.2 143.7 1.0 OD2 B:ASP67 4.3 154.0 1.0 O2B B:GTP201 4.3 162.0 1.0 HA B:THR44 4.3 157.1 1.0 CA B:THR26 4.3 149.3 1.0 CG2 B:THR26 4.4 146.7 1.0 PA B:GTP201 4.4 170.4 1.0 O B:ILE42 4.4 171.2 1.0 HE1 B:TYR41 4.4 169.0 1.0 HZ3 B:LYS25 4.4 148.7 1.0 HZ2 B:LYS25 4.5 149.9 1.0 OD1 B:ASP67 4.5 138.4 1.0 H B:GLY70 4.6 145.1 1.0 C B:ALA43 4.6 159.8 1.0 O1A B:GTP201 4.6 158.3 1.0 HA B:THR26 4.7 148.7 1.0 CG B:ASP67 4.8 141.4 1.0 NZ B:LYS25 4.8 148.7 1.0 HG23 B:THR26 4.8 145.6 1.0 O B:THR68 4.9 139.1 1.0 C B:THR44 4.9 150.3 1.0 CE B:LYS25 4.9 141.1 1.0 CA B:ALA43 4.9 160.3 1.0 H B:GLY22 5.0 160.2 1.0

H.Y.J.Fung, S.R.Mittal, A.B.Niesman, J.Jiou, B.Shakya, T.Yoshizawa, A.E.Cansizoglu, M.P.Rout, Y.M.Chook. Phosphate-Dependent Nuclear Export Via A Non-Classical Nes Class Recognized By Exportin MSN5 Nat Commun 2025.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-025-57752-3