Magnesium in PDB 9jkp: Crystal Structure of the Staphylococcus Aureus Gtpase Era in Complex with Gdp

The structure of Crystal Structure of the Staphylococcus Aureus Gtpase Era in Complex with Gdp, PDB code: 9jkp was solved by E.Klochkova, A.Biktimirov, D.Islamov, A.Belousov, M.Yusupov, K.Usachev, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.20 / 2.76
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.146, 78.146, 244.905, 90, 90, 90
R / Rfree (%)	17 / 22.4

The binding sites of Magnesium atom in the Crystal Structure of the Staphylococcus Aureus Gtpase Era in Complex with Gdp (pdb code 9jkp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Staphylococcus Aureus Gtpase Era in Complex with Gdp, PDB code: 9jkp:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Staphylococcus Aureus Gtpase Era in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Staphylococcus Aureus Gtpase Era in Complex with Gdp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:99.9 occ:1.00 O2A B:GDP401 2.9 91.6 1.0 O2B B:GDP401 3.1 85.4 1.0 PB B:GDP401 3.9 86.8 1.0 O1B B:GDP401 3.9 88.4 1.0 PA B:GDP401 3.9 87.0 1.0 O5' B:GDP401 4.1 96.6 1.0 O3A B:GDP401 4.2 86.6 1.0 OD1 B:ASN17 4.2 105.1 1.0 H B:ASN17 4.2 89.1 1.0 HA B:ASN17 4.5 92.5 1.0 CG B:ASN17 4.7 105.7 1.0 ND2 B:ASN17 4.8 118.4 1.0 HD21 B:ASN17 4.8 116.8 1.0 OG B:SER21 5.0 100.1 1.0 N B:ASN17 5.0 88.2 1.0

E.Klochkova, A.Biktimirov, D.Islamov, A.Belousov, S.Validov, M.Yusupov, K.Usachev. Crystal Structure of the Gdp-Bound Gtpase Era From Staphylococcus Aureus. Biochem.Biophys.Res.Commun. V. 735 50852 2024.
ISSN: ESSN 1090-2104
PubMed: 39432921
DOI: 10.1016/J.BBRC.2024.150852