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Magnesium in PDB 1jx4: Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide

Enzymatic activity of Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide

All present enzymatic activity of Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide, PDB code: 1jx4 was solved by H.Ling, F.Boudsocq, R.Woodgate, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 500.00 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 97.090, 102.820, 52.300, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 22.8

Other elements in 1jx4:

The structure of Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide (pdb code 1jx4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide, PDB code: 1jx4:

Magnesium binding site 1 out of 1 in 1jx4

Go back to Magnesium Binding Sites List in 1jx4
Magnesium binding site 1 out of 1 in the Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Y-Family Dna Polymerase in A Ternary Complex with Dna Substrates and An Incoming Nucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg4002

b:19.5
occ:1.00
 O A:HOH4003 1.8 38.5 1.0
O A:HOH4174 2.1 45.7 1.0
O A:ALA181 2.3 30.3 1.0
O P:HOH19 2.3 28.9 1.0
O P:HOH17 2.4 31.9 1.0
O A:ILE186 2.5 25.6 1.0
C A:ALA181 3.5 29.6 1.0
C A:ILE186 3.7 23.5 1.0
CA A:ALA181 4.3 30.2 1.0
CA A:GLY187 4.3 26.2 1.0
N A:ASP182 4.5 28.2 1.0
N A:GLY187 4.5 25.4 1.0
OP1 P:DT12 4.5 32.5 1.0
CB A:ALA181 4.5 30.8 1.0
O A:HOH4164 4.5 58.1 1.0
CA A:ASP182 4.5 27.9 1.0
OP2 P:DT12 4.7 33.1 1.0
O A:VAL183 4.7 22.5 1.0
O A:HOH4216 4.7 50.9 1.0
C A:GLY187 4.7 30.6 1.0
CA A:ILE186 4.8 22.5 1.0
CB A:ILE186 4.8 23.2 1.0

Reference:

H.Ling, F.Boudsocq, R.Woodgate, W.Yang. Crystal Structure of A Y-Family Dna Polymerase in Action: A Mechanism For Error-Prone and Lesion-Bypass Replication. Cell(Cambridge,Mass.) V. 107 91 2001.
ISSN: ISSN 0092-8674
PubMed: 11595188
DOI: 10.1016/S0092-8674(01)00515-3
Page generated: Sat Aug 9 23:32:24 2025

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