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Magnesium in PDB 3ktn: Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis

Enzymatic activity of Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis

All present enzymatic activity of Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis:
2.7.1.45;

Protein crystallography data

The structure of Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis, PDB code: 3ktn was solved by L.Satyanarayana, S.K.Burley, S.Swaminathan, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.59 / 2.26
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 145.564, 145.564, 126.401, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 23.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis (pdb code 3ktn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis, PDB code: 3ktn:

Magnesium binding site 1 out of 1 in 3ktn

Go back to Magnesium Binding Sites List in 3ktn
Magnesium binding site 1 out of 1 in the Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:44.4
occ:1.00
 O A:HOH1 2.3 19.9 1.0
O A:HOH357 2.6 27.4 1.0
O A:ILE274 2.7 28.7 1.0
O A:ASP272 2.9 26.4 1.0
O A:ALA308 3.2 26.6 1.0
N A:ALA276 3.5 29.3 1.0
O A:GLY313 3.5 25.8 1.0
C A:ARG273 3.5 30.1 1.0
C A:ILE274 3.5 29.1 1.0
CB A:ALA276 3.7 31.1 1.0
N A:ILE274 3.7 30.5 1.0
O A:ARG273 3.8 29.9 1.0
O A:HOH391 3.8 31.6 1.0
C A:ASP272 3.8 28.2 1.0
CA A:ALA276 3.8 31.3 1.0
CA A:ARG273 3.9 30.6 1.0
C A:ALA308 3.9 27.6 1.0
C A:GLY275 4.2 29.5 1.0
N A:ARG273 4.2 28.5 1.0
CA A:ILE274 4.2 29.9 1.0
OD1 A:ASP272 4.2 30.8 1.0
CB A:ALA308 4.3 25.7 1.0
O A:ILE311 4.4 26.8 1.0
N A:GLY275 4.4 28.4 1.0
O A:ASP314 4.5 32.9 1.0
C A:GLY313 4.5 28.9 1.0
CA A:ASP314 4.5 32.9 1.0
CA A:GLY275 4.6 27.9 1.0
N A:HIS309 4.6 24.6 1.0
CG A:ASP272 4.7 30.4 1.0
CA A:ALA308 4.7 27.7 1.0
CA A:HIS309 4.7 25.8 1.0
CB A:ASP272 4.8 27.1 1.0
C A:ASP314 4.8 32.8 1.0
CA A:ASP272 4.9 27.6 1.0
O A:GLY275 4.9 30.4 1.0
N A:ASP314 4.9 31.2 1.0

Reference:

L.Satyanarayana, S.K.Burley, S.Swaminathan. Crystal Structure of A Putative 2-Keto-3-Deoxygluconate Kinase From Enterococcus Faecalis To Be Published.
Page generated: Sun Aug 10 23:57:49 2025

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