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Magnesium in PDB 3stp: Crystal Structure of A Putative Galactonate Dehydratase

Protein crystallography data

The structure of Crystal Structure of A Putative Galactonate Dehydratase, PDB code: 3stp was solved by S.Eswaramoorthy, S.Chamala, B.Evans, R.Foti, A.Gizzi, B.Hillerich, A.Kar, J.Lafleur, R.Seidel, G.Villigas, W.Zencheck, S.C.Almo, S.Swaminathan, Newyork Structural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.88
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 135.244, 135.244, 116.734, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Putative Galactonate Dehydratase (pdb code 3stp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Putative Galactonate Dehydratase, PDB code: 3stp:

Magnesium binding site 1 out of 1 in 3stp

Go back to Magnesium Binding Sites List in 3stp
Magnesium binding site 1 out of 1 in the Crystal Structure of A Putative Galactonate Dehydratase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Galactonate Dehydratase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg391

b:5.1
occ:1.00
OE2 A:GLU214 2.0 6.6 1.0
O A:HOH393 2.0 5.4 1.0
OE2 A:GLU240 2.1 4.1 1.0
OE1 A:GLU266 2.1 6.1 1.0
O A:HOH392 2.1 4.1 1.0
O A:HOH394 2.1 6.7 1.0
CD A:GLU214 3.0 6.4 1.0
CD A:GLU266 3.1 6.7 1.0
CD A:GLU240 3.1 6.4 1.0
OE2 A:GLU266 3.4 7.3 1.0
OE1 A:GLU214 3.5 6.4 1.0
O A:HOH428 3.5 13.0 1.0
CG A:GLU240 3.8 3.0 1.0
NZ A:LYS177 3.9 6.6 1.0
O A:HOH462 4.0 6.7 1.0
OE1 A:GLU240 4.0 4.5 1.0
CD2 A:HIS316 4.2 6.5 1.0
O A:HOH402 4.2 4.3 1.0
OE1 A:GLU241 4.3 5.4 1.0
CG A:GLU214 4.3 6.1 1.0
CG A:GLU266 4.4 4.7 1.0
CD1 A:TYR216 4.7 6.2 1.0
CB A:GLU240 4.8 3.9 1.0
CE A:LYS177 4.8 4.2 1.0
NE2 A:HIS316 4.8 6.1 1.0

Reference:

S.Eswaramoorthy, S.C.Almo, S.Swaminathan. Crystal Structure of A Putative Galactonate Dehydratase To Be Published.
Page generated: Mon Aug 11 03:14:49 2025

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