Magnesium in PDB 4ykk: Mnemiopsis Leidyi ML032222A Iglur Lbd D-Serine Complex

The structure of Mnemiopsis Leidyi ML032222A Iglur Lbd D-Serine Complex, PDB code: 4ykk was solved by R.G.Alberstein, M.L.Mayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.13 / 1.38
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.951, 123.753, 54.505, 90.00, 111.78, 90.00
R / Rfree (%)	14.4 / 16.7

The binding sites of Magnesium atom in the Mnemiopsis Leidyi ML032222A Iglur Lbd D-Serine Complex (pdb code 4ykk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mnemiopsis Leidyi ML032222A Iglur Lbd D-Serine Complex, PDB code: 4ykk:

Magnesium binding site 1 out of 1 in the Mnemiopsis Leidyi ML032222A Iglur Lbd D-Serine Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mnemiopsis Leidyi ML032222A Iglur Lbd D-Serine Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:24.3 occ:0.66 OE2 B:GLU213 2.0 36.0 1.0 OE2 A:GLU213 2.0 37.0 1.0 OD1 A:ASP110 2.0 35.1 0.7 O A:HOH486 2.2 24.5 1.0 OD1 B:ASP110 2.2 21.2 0.6 O B:HOH519 2.2 28.0 1.0 CD B:GLU213 2.8 24.2 1.0 CD A:GLU213 2.9 27.5 1.0 CG A:ASP110 3.0 31.8 0.7 OE1 B:GLU213 3.0 30.9 1.0 OE1 A:GLU213 3.1 33.2 1.0 HH22 A:ARG236 3.1 47.1 1.0 CG B:ASP110 3.1 28.2 0.6 HH22 B:ARG236 3.2 45.0 1.0 HB3 A:ASP110 3.3 26.9 0.3 OD2 A:ASP110 3.3 37.5 0.7 HB3 B:ASP110 3.5 23.0 0.4 HH12 A:ARG236 3.5 43.0 1.0 OD2 B:ASP110 3.5 40.8 0.6 HH12 B:ARG236 3.6 38.1 1.0 O B:HOH816 3.6 58.4 1.0 NH2 A:ARG236 3.9 39.2 1.0 NH2 B:ARG236 4.0 37.5 1.0 NH1 A:ARG236 4.2 35.8 1.0 CG B:GLU213 4.2 16.5 1.0 CB A:ASP110 4.2 22.4 0.3 NH1 B:ARG236 4.3 31.8 1.0 CG A:GLU213 4.3 17.6 1.0 CB B:ASP110 4.4 19.2 0.4 CB A:ASP110 4.4 22.7 0.7 HA B:ASP110 4.4 15.2 0.6 HG3 B:PRO107 4.4 22.5 1.0 HA A:ASP110 4.4 17.8 0.7 HG2 B:GLU213 4.5 19.9 1.0 HA B:ASP110 4.5 15.2 0.4 CB B:ASP110 4.5 19.6 0.6 HG2 A:GLU213 4.5 21.1 1.0 HA A:ASP110 4.5 18.1 0.3 HH21 A:ARG236 4.5 47.1 1.0 HH21 B:ARG236 4.5 45.0 1.0 HB2 A:ASP110 4.5 26.9 0.3 HG3 B:GLU213 4.5 19.9 1.0 HB2 B:ASP110 4.5 23.0 0.4 CZ A:ARG236 4.5 35.5 1.0 CZ B:ARG236 4.6 32.5 1.0 HG3 A:GLU213 4.6 21.1 1.0 HG3 A:PRO107 4.6 27.6 1.0 HG2 A:PRO107 4.6 27.6 1.0 HG2 B:PRO107 4.6 22.5 1.0 HB2 A:ASP110 4.7 27.3 0.7 HB2 B:PRO107 4.7 15.6 1.0 HB2 B:ASP110 4.8 23.6 0.6 HB2 A:PRO107 4.8 20.9 1.0 CA A:ASP110 4.8 15.1 0.3 CA A:ASP110 4.8 14.8 0.7 CA B:ASP110 4.8 12.7 0.6 CA B:ASP110 4.8 12.6 0.4 CG B:PRO107 4.9 18.8 1.0 HH11 A:ARG236 4.9 43.0 1.0 N A:ASP110 4.9 14.9 0.7 N B:ASP110 5.0 12.9 0.6 N A:ASP110 5.0 15.0 0.3 HH11 B:ARG236 5.0 38.1 1.0 CG A:PRO107 5.0 23.0 1.0

R.Alberstein, R.Grey, A.Zimmet, D.K.Simmons, M.L.Mayer. Glycine Activated Ion Channel Subunits Encoded By Ctenophore Glutamate Receptor Genes. Proc.Natl.Acad.Sci.Usa V. 112 E6048 2015.
ISSN: ESSN 1091-6490
PubMed: 26460032
DOI: 10.1073/PNAS.1513771112