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Magnesium in PDB 5tff: Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp

Enzymatic activity of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp

All present enzymatic activity of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp:
3.6.3.49;

Protein crystallography data

The structure of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp, PDB code: 5tff was solved by C.Wang, A.A.Aleksandrov, Z.Yang, F.Forouhar, E.Proctor, P.Kota, J.An, A.Kaplan, N.Khazanov, G.Boel, B.R.Stockwell, H.Senderowitz, N.V.Dokholyan, J.R.Riordan, C.G.Brouillette, J.F.Hunt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.18 / 1.89
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 40.183, 40.183, 141.794, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 19

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp (pdb code 5tff). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp, PDB code: 5tff:

Magnesium binding site 1 out of 1 in 5tff

Go back to Magnesium Binding Sites List in 5tff
Magnesium binding site 1 out of 1 in the Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nucleotide-Binding Domain 1 of the Human Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) with Utp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:11.3
occ:1.00
 O2G A:UTP702 2.0 16.3 1.0
OG1 A:THR465 2.0 9.7 1.0
O2B A:UTP702 2.1 12.9 1.0
OE1 A:GLN493 2.1 11.7 1.0
O A:HOH822 2.1 11.4 1.0
O A:HOH808 2.2 12.9 1.0
CD A:GLN493 3.1 14.9 1.0
CB A:THR465 3.1 11.8 1.0
PG A:UTP702 3.2 14.1 1.0
PB A:UTP702 3.3 12.2 1.0
NE2 A:GLN493 3.5 14.9 1.0
O3B A:UTP702 3.6 15.9 1.0
OD2 A:ASP572 3.9 15.4 1.0
N A:THR465 4.0 9.3 1.0
O1A A:UTP702 4.0 15.0 1.0
O1G A:UTP702 4.0 15.0 1.0
OD1 A:ASP572 4.0 11.0 1.0
O A:HOH855 4.1 13.6 1.0
CA A:THR465 4.1 9.2 1.0
CG2 A:THR465 4.1 12.1 1.0
O3A A:UTP702 4.4 14.2 1.0
CG A:ASP572 4.4 14.3 1.0
CG A:GLN493 4.4 13.3 1.0
O3G A:UTP702 4.4 15.1 1.0
O1B A:UTP702 4.5 12.7 1.0
PA A:UTP702 4.7 14.8 1.0
O A:HOH816 4.8 14.2 1.0
CB A:GLN493 5.0 13.9 1.0

Reference:

C.Wang, A.A.Aleksandrov, Z.Yang, F.Forouhar, E.Proctor, P.Kota, J.An, A.Kaplan, N.Khazanov, G.Boel, B.R.Stockwell, H.Senderowitz, N.V.Dokholyan, J.R.Riordan, C.G.Brouillette, J.F.Hunt. Thermodynamic Correction of F508DEL-Cftr By Ligand Binding to A Remote Site in the Mutated Domain To Be Published.
Page generated: Mon Sep 30 04:51:20 2024

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