Magnesium in PDB 5zr1: Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element

The binding sites of Magnesium atom in the Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element (pdb code 5zr1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element, PDB code: 5zr1:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2002 b:30.0 occ:1.00 OG1 A:THR486 2.1 23.9 1.0 O2B A:AGS2001 2.1 23.3 1.0 O3G A:AGS2001 2.6 23.3 1.0 CB A:THR486 2.7 23.9 1.0 CG2 A:THR486 3.1 23.9 1.0 O3A A:AGS2001 3.2 23.3 1.0 PB A:AGS2001 3.2 23.3 1.0 NH2 D:ARG267 3.4 19.0 1.0 PG A:AGS2001 3.8 23.3 1.0 O3B A:AGS2001 4.0 23.3 1.0 OD2 A:ASP566 4.0 23.6 1.0 NH2 A:ARG704 4.0 27.2 1.0 CA A:THR486 4.1 23.9 1.0 O1B A:AGS2001 4.4 23.3 1.0 CZ D:ARG267 4.4 19.0 1.0 N A:THR486 4.4 23.9 1.0 PA A:AGS2001 4.5 23.3 1.0 OE2 A:GLU567 4.5 28.8 1.0 OD1 A:ASP566 4.5 23.6 1.0 O1A A:AGS2001 4.6 23.3 1.0 S1G A:AGS2001 4.6 23.3 1.0 CG A:ASP566 4.7 23.6 1.0 NH1 D:ARG267 4.8 19.0 1.0

Magnesium binding site 2 out of 3 in the Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2002 b:30.0 occ:1.00 OG1 D:THR109 2.1 20.4 1.0 O2G D:AGS2001 2.1 15.7 1.0 O2B D:AGS2001 2.9 15.7 1.0 CB D:THR109 3.1 20.4 1.0 OE2 E:GLU154 3.2 16.9 1.0 OE1 E:GLU154 3.3 16.9 1.0 CD E:GLU154 3.6 16.9 1.0 PG D:AGS2001 3.6 15.7 1.0 CG2 D:THR109 3.6 20.4 1.0 OD2 D:ASP217 4.1 14.2 1.0 CG D:ASP217 4.1 14.2 1.0 CE E:LYS151 4.2 10.1 1.0 PB D:AGS2001 4.2 15.7 1.0 OD1 D:ASP217 4.2 14.2 1.0 O3B D:AGS2001 4.3 15.7 1.0 O3G D:AGS2001 4.4 15.7 1.0 CA D:THR109 4.4 20.4 1.0 N D:THR109 4.5 20.4 1.0 CD E:LYS151 4.6 10.1 1.0 S1G D:AGS2001 4.7 15.7 1.0 O2A D:AGS2001 4.7 15.7 1.0 CB D:ASP217 4.7 14.2 1.0 O1A D:AGS2001 4.8 15.7 1.0 O1B D:AGS2001 5.0 15.7 1.0

Magnesium binding site 3 out of 3 in the Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Saccharomyces Cerevisiae Origin Recognition Complex Bound to A 72-Bp Origin Dna Containing Acs and B1 Element within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg2002 b:30.0 occ:1.00 O3G E:AGS2001 2.1 15.0 1.0 O2B E:AGS2001 2.2 15.0 1.0 CG2 E:THR44 2.5 15.3 1.0 OG1 E:THR44 3.1 15.3 1.0 CB E:THR44 3.4 15.3 1.0 O2A E:AGS2001 3.5 15.0 1.0 PG E:AGS2001 3.6 15.0 1.0 PB E:AGS2001 3.6 15.0 1.0 OD2 E:ASP133 3.9 11.4 1.0 O3B E:AGS2001 4.1 15.0 1.0 O2G E:AGS2001 4.2 15.0 1.0 O3A E:AGS2001 4.4 15.0 1.0 PA E:AGS2001 4.5 15.0 1.0 CA E:THR44 4.6 15.3 1.0 N E:THR44 4.6 15.3 1.0 O1B E:AGS2001 4.7 15.0 1.0 CG E:ASP133 4.8 11.4 1.0 OD1 E:ASP133 4.9 11.4 1.0 S1G E:AGS2001 5.0 15.0 1.0

N.Li, W.H.Lam, Y.Zhai, J.Cheng, E.Cheng, Y.Zhao, N.Gao, B.K.Tye. Structure of the Origin Recognition Complex Bound to Dna Replication Origin. Nature V. 559 217 2018.
ISSN: ESSN 1476-4687
PubMed: 29973722
DOI: 10.1038/S41586-018-0293-X