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Magnesium in PDB 6ovy: X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C

Enzymatic activity of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C

All present enzymatic activity of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C:
2.7.7.6;

Protein crystallography data

The structure of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C, PDB code: 6ovy was solved by Y.Shin, K.S.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.66 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 184.830, 102.479, 295.596, 90.00, 98.80, 90.00
R / Rfree (%) 21.3 / 23.7

Other elements in 6ovy:

The structure of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C (pdb code 6ovy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C, PDB code: 6ovy:

Magnesium binding site 1 out of 1 in 6ovy

Go back to Magnesium Binding Sites List in 6ovy
Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1602

b:59.5
occ:1.00
OD1 D:ASP739 1.9 64.6 1.0
O3' I:G5 2.3 66.7 1.0
OD1 D:ASP743 2.4 48.9 1.0
OD1 D:ASP741 2.5 54.4 1.0
OD2 D:ASP741 2.7 68.6 1.0
CG D:ASP739 2.9 64.0 1.0
CG D:ASP741 2.9 60.8 1.0
OD2 D:ASP743 3.1 47.0 1.0
CG D:ASP743 3.1 49.7 1.0
OD2 D:ASP739 3.3 66.6 1.0
C3' I:G5 3.6 55.2 1.0
O2' I:G5 3.8 52.8 1.0
N D:ASP739 4.1 49.6 1.0
CB D:ASP739 4.2 55.1 1.0
C2' I:G5 4.2 54.3 1.0
C4' I:G5 4.2 53.7 1.0
CB D:ASP741 4.5 52.6 1.0
CA D:ASP739 4.5 47.5 1.0
C D:ASP739 4.7 49.9 1.0
CB D:ASP743 4.7 39.7 1.0
NH2 D:ARG704 4.7 46.0 1.0
N D:ASP741 4.8 55.1 1.0
C5' I:G5 4.9 51.2 1.0
O D:ASP739 4.9 48.5 1.0
O6 D:POP1601 5.0 0.2 1.0

Reference:

K.S.Murakami, Y.Shin. Structural Basis of Reiterative Transcription From the Pyrg Promoter To Be Published.
Page generated: Wed Aug 13 13:28:08 2025

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