Magnesium in PDB 6tmt: Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I

The structure of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I, PDB code: 6tmt was solved by A.Bracher, S.S.Paul, H.Wang, N.Wischnewski, F.U.Hartl, M.Hayer-Hartl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 4.03
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	137.920, 149.427, 268.830, 90.00, 90.00, 90.00
R / Rfree (%)	25.6 / 29.9

The binding sites of Magnesium atom in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I (pdb code 6tmt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I, PDB code: 6tmt:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:0.7 occ:1.00 OD1 A:ASP86 2.1 0.9 1.0 CG A:ASP86 3.0 0.0 1.0 OD1 A:ASP51 3.1 1.0 1.0 OD2 A:ASP412 3.3 0.7 1.0 OD2 A:ASP86 3.4 0.1 1.0 O3G A:ATP602 3.4 0.6 1.0 CG A:ASP412 3.6 0.9 1.0 CB A:ASP412 4.1 0.4 1.0 OD1 A:ASP412 4.1 0.1 1.0 CG A:ASP51 4.1 0.3 1.0 O A:SER146 4.2 0.3 1.0 PG A:ATP602 4.3 0.8 1.0 OD2 A:ASP51 4.3 0.8 1.0 O2G A:ATP602 4.3 0.7 1.0 CB A:ASP86 4.4 0.1 1.0 CA A:ASP86 4.7 0.6 1.0 O1G A:ATP602 4.8 0.4 1.0

Magnesium binding site 2 out of 7 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:1.0 occ:1.00 OD1 B:ASP86 2.1 0.6 1.0 OD1 B:ASP51 3.1 0.9 1.0 CG B:ASP86 3.1 0.5 1.0 O3G B:ATP602 3.3 0.8 1.0 OD2 B:ASP86 3.5 0.0 1.0 O B:SER146 3.6 0.0 1.0 OD2 B:ASP412 3.8 0.3 1.0 CG B:ASP51 4.0 0.8 1.0 CG B:ASP412 4.0 0.8 1.0 OD2 B:ASP51 4.1 0.4 1.0 PG B:ATP602 4.4 0.2 1.0 CB B:ASP412 4.4 0.2 1.0 OD1 B:ASP412 4.4 0.8 1.0 CB B:ASP86 4.4 0.4 1.0 O1G B:ATP602 4.5 0.7 1.0 ND2 B:ASN148 4.6 0.8 1.0 C B:SER146 4.8 0.3 1.0 CA B:ASP86 4.9 0.5 1.0

Magnesium binding site 3 out of 7 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:0.1 occ:1.00 OD1 C:ASP86 2.1 0.4 1.0 OD1 C:ASP51 2.8 0.2 1.0 CG C:ASP86 3.2 0.5 1.0 O3G C:ATP602 3.3 0.3 1.0 OD2 C:ASP86 3.7 0.5 1.0 OD2 C:ASP412 3.8 0.7 1.0 CG C:ASP51 3.9 0.4 1.0 O C:SER146 4.2 0.8 1.0 PG C:ATP602 4.3 0.4 1.0 CG C:ASP412 4.3 0.9 1.0 OD2 C:ASP51 4.3 0.0 1.0 CB C:ASP86 4.4 0.5 1.0 O1G C:ATP602 4.6 0.2 1.0 O2G C:ATP602 4.7 0.3 1.0 CB C:ASP412 4.7 0.1 1.0 CA C:ASP86 4.8 0.8 1.0 OD1 C:ASP412 5.0 0.6 1.0

Magnesium binding site 4 out of 7 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:0.7 occ:1.00 OD1 D:ASP86 2.1 0.9 1.0 CG D:ASP86 2.9 0.3 1.0 OD2 D:ASP86 3.0 0.8 1.0 OD1 D:ASP51 3.0 0.5 1.0 O3G D:ATP602 3.2 0.2 1.0 OD2 D:ASP412 3.3 0.2 1.0 CG D:ASP412 3.7 0.2 1.0 CG D:ASP51 3.9 0.3 1.0 O D:SER146 4.0 0.3 1.0 OD2 D:ASP51 4.0 0.4 1.0 CB D:ASP412 4.1 0.1 1.0 PG D:ATP602 4.2 0.7 1.0 O2G D:ATP602 4.2 0.8 1.0 CB D:ASP86 4.3 0.2 1.0 OD1 D:ASP412 4.5 0.5 1.0 CA D:ASP86 4.7 0.8 1.0 O1G D:ATP602 4.8 0.5 1.0

Magnesium binding site 5 out of 7 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:1.0 occ:1.00 OD1 E:ASP86 2.1 0.4 1.0 CG E:ASP86 3.0 0.1 1.0 O3G E:ATP602 3.1 0.2 1.0 OD1 E:ASP51 3.2 0.3 1.0 OD2 E:ASP86 3.3 0.3 1.0 PG E:ATP602 3.8 0.8 1.0 O1G E:ATP602 4.0 0.8 1.0 O2G E:ATP602 4.1 0.2 1.0 CG E:ASP51 4.2 0.7 1.0 O E:SER146 4.3 0.0 1.0 OD2 E:ASP412 4.3 0.8 1.0 CB E:ASP86 4.4 0.6 1.0 OD2 E:ASP51 4.6 0.9 1.0 CG E:ASP412 4.6 0.1 1.0 CA E:ASP86 4.7 0.3 1.0 CB E:ASP412 4.8 0.5 1.0 ND2 E:ASN148 4.8 0.2 1.0

Magnesium binding site 6 out of 7 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:0.3 occ:1.00 OD1 F:ASP86 2.1 0.6 1.0 CG F:ASP86 3.2 0.0 1.0 OD1 F:ASP51 3.3 0.1 1.0 OD2 F:ASP412 3.4 0.4 1.0 O3G F:ATP602 3.5 0.6 1.0 CG F:ASP412 3.6 0.2 1.0 OD2 F:ASP86 3.7 0.3 1.0 CB F:ASP412 3.8 0.7 1.0 CG F:ASP51 4.1 0.8 1.0 OD2 F:ASP51 4.1 0.8 1.0 O F:SER146 4.2 0.8 1.0 OD1 F:ASP412 4.3 0.3 1.0 CB F:ASP86 4.4 0.1 1.0 PG F:ATP602 4.4 0.9 1.0 CA F:ASP86 4.7 0.3 1.0 O2G F:ATP602 4.7 0.1 1.0 O1G F:ATP602 4.8 0.2 1.0 OD2 F:ASP81 5.0 0.4 1.0 N F:ASP86 5.0 0.4 1.0

Magnesium binding site 7 out of 7 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg601 b:0.3 occ:1.00 OD1 G:ASP86 2.1 0.9 1.0 OD1 G:ASP51 2.9 0.3 1.0 O3G G:ATP600 3.0 0.3 1.0 CG G:ASP86 3.1 0.9 1.0 OD2 G:ASP412 3.3 0.6 1.0 CG G:ASP412 3.5 1.0 1.0 O2G G:ATP600 3.5 97.6 1.0 OD2 G:ASP86 3.6 0.4 1.0 OD1 G:ASP412 3.6 0.1 1.0 PG G:ATP600 3.6 97.5 1.0 CG G:ASP51 3.9 0.3 1.0 OD2 G:ASP51 4.1 0.8 1.0 O1G G:ATP600 4.2 97.0 1.0 CB G:ASP86 4.2 0.5 1.0 CA G:ASP86 4.2 0.9 1.0 CB G:ASP412 4.3 0.2 1.0 OD2 G:ASP81 4.5 0.0 1.0 N G:ASP86 4.6 0.8 1.0

A.Bracher, S.S.Paul, H.Wang, N.Wischnewski, F.U.Hartl, M.Hayer-Hartl. Structure and Conformational Cycle of A Bacteriophage-Encoded Chaperonin Plos One 2020.
ISSN: ESSN 1932-6203