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Magnesium in PDB 7ejc: Human RAD51 Presynaptic Complex

Other elements in 7ejc:

The structure of Human RAD51 Presynaptic Complex also contains other interesting chemical elements:

Bromine (Br) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human RAD51 Presynaptic Complex (pdb code 7ejc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Human RAD51 Presynaptic Complex, PDB code: 7ejc:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 7ejc

Go back to Magnesium Binding Sites List in 7ejc
Magnesium binding site 1 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:110.6
occ:1.00
OG1 A:THR134 1.6 111.0 1.0
O3G B:ANP401 2.0 116.9 1.0
O2B B:ANP401 2.3 116.9 1.0
CB A:THR134 2.8 111.0 1.0
CG2 A:THR134 3.2 111.0 1.0
PG B:ANP401 3.5 116.9 1.0
OE1 A:GLU163 3.6 118.6 1.0
PB B:ANP401 3.7 116.9 1.0
OG1 A:THR165 3.9 115.9 1.0
OD2 A:ASP222 3.9 111.8 1.0
CA A:THR134 4.0 111.0 1.0
N3B B:ANP401 4.1 116.9 1.0
OD1 A:ASP222 4.1 111.8 1.0
O2G B:ANP401 4.2 116.9 1.0
CG A:ASP222 4.4 111.8 1.0
O1G B:ANP401 4.5 116.9 1.0
CB A:THR165 4.5 115.9 1.0
CG2 A:THR165 4.5 115.9 1.0
N A:THR134 4.5 111.0 1.0
O3A B:ANP401 4.6 116.9 1.0
CD A:GLU163 4.6 118.6 1.0
O1B B:ANP401 4.6 116.9 1.0
O2A B:ANP401 4.7 116.9 1.0
OG A:SER223 5.0 111.4 1.0

Magnesium binding site 2 out of 3 in 7ejc

Go back to Magnesium Binding Sites List in 7ejc
Magnesium binding site 2 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:109.3
occ:1.00
OG1 C:THR134 1.6 109.6 1.0
O3G C:ANP401 2.0 116.0 1.0
O2B C:ANP401 2.3 116.0 1.0
CB C:THR134 2.8 109.6 1.0
CG2 C:THR134 3.2 109.6 1.0
PG C:ANP401 3.5 116.0 1.0
OE1 C:GLU163 3.6 116.2 1.0
PB C:ANP401 3.7 116.0 1.0
OG1 C:THR165 3.9 113.5 1.0
OD2 C:ASP222 3.9 109.9 1.0
CA C:THR134 4.0 109.6 1.0
N3B C:ANP401 4.1 116.0 1.0
OD1 C:ASP222 4.1 109.9 1.0
O2G C:ANP401 4.2 116.0 1.0
CG C:ASP222 4.4 109.9 1.0
O1G C:ANP401 4.5 116.0 1.0
CB C:THR165 4.5 113.5 1.0
CG2 C:THR165 4.5 113.5 1.0
N C:THR134 4.5 109.6 1.0
O3A C:ANP401 4.6 116.0 1.0
O1B C:ANP401 4.6 116.0 1.0
CD C:GLU163 4.6 116.2 1.0
O2A C:ANP401 4.7 116.0 1.0
OG C:SER223 5.0 111.2 1.0

Magnesium binding site 3 out of 3 in 7ejc

Go back to Magnesium Binding Sites List in 7ejc
Magnesium binding site 3 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:114.4
occ:1.00
O3G C:ANP403 2.0 117.0 1.0
O2B C:ANP403 2.3 117.0 1.0
CB B:THR134 3.1 110.9 1.0
OG1 B:THR134 3.1 110.9 1.0
PG C:ANP403 3.5 117.0 1.0
OE1 B:GLU163 3.6 118.6 1.0
PB C:ANP403 3.7 117.0 1.0
CG2 B:THR134 3.8 110.9 1.0
OG1 B:THR165 3.9 116.2 1.0
OD2 B:ASP222 3.9 112.5 1.0
N3B C:ANP403 4.1 117.0 1.0
OD1 B:ASP222 4.1 112.5 1.0
O2G C:ANP403 4.2 117.0 1.0
CA B:THR134 4.3 110.9 1.0
CG B:ASP222 4.4 112.5 1.0
O1G C:ANP403 4.5 117.0 1.0
CB B:THR165 4.5 116.2 1.0
N B:THR134 4.5 110.9 1.0
CG2 B:THR165 4.5 116.2 1.0
O3A C:ANP403 4.6 117.0 1.0
O1B C:ANP403 4.6 117.0 1.0
CD B:GLU163 4.6 118.6 1.0
O2A C:ANP403 4.7 117.0 1.0
OG B:SER223 5.0 112.8 1.0

Reference:

J.Xu, L.Zhao, S.Peng, H.Chu, R.Liang, M.Tian, P.P.Connell, G.Li, C.Chen, H.W.Wang. Mechanisms of Distinctive Mismatch Tolerance Between RAD51 and DMC1 in Homologous Recombination. Nucleic Acids Res. V. 49 13135 2021.
ISSN: ESSN 1362-4962
PubMed: 34871438
DOI: 10.1093/NAR/GKAB1141
Page generated: Wed Oct 2 20:45:02 2024

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