Magnesium in PDB 7pm8: Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 3)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 3) (pdb code 7pm8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 3), PDB code: 7pm8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:61.9 occ:1.00 O1B A:ADP1902 2.1 65.6 1.0 OG1 A:THR170 2.2 61.4 1.0 O3B A:ADP1902 2.6 65.6 1.0 PB A:ADP1902 2.8 65.6 1.0 CB A:THR170 3.3 61.4 1.0 OG A:SER218 3.6 56.8 1.0 O3A A:ADP1902 4.0 65.6 1.0 O2B A:ADP1902 4.0 65.6 1.0 OD2 A:ASP437 4.0 53.6 1.0 N A:THR170 4.2 61.4 1.0 CG2 A:THR170 4.3 61.4 1.0 CA A:THR170 4.4 61.4 1.0 O1A A:ADP1902 4.5 65.6 1.0 ND2 A:ASN216 4.6 61.6 1.0 PA A:ADP1902 4.6 65.6 1.0 ND2 A:ASN208 4.7 57.3 1.0 CB A:SER218 4.7 56.8 1.0 O2A A:ADP1902 4.9 65.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Strong-Adp State (Central 1ER, Class 3) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:60.5 occ:1.00 O2B C:ADP401 2.2 58.8 1.0 O3B C:ADP401 2.9 58.8 1.0 PB C:ADP401 3.0 58.8 1.0 O2A C:ADP401 3.4 58.8 1.0 O3A C:ADP401 3.7 58.8 1.0 PA C:ADP401 4.1 58.8 1.0 OE1 C:GLN137 4.2 53.6 1.0 OD2 C:ASP11 4.2 62.3 1.0 O1B C:ADP401 4.4 58.8 1.0 CD C:GLN137 4.4 53.6 1.0 OD2 C:ASP154 4.5 55.1 1.0 CA C:GLY156 4.6 55.7 1.0 OD1 C:ASP154 4.6 55.1 1.0 NZ C:LYS18 4.7 53.7 1.0 CG2 C:VAL339 4.8 48.3 1.0 CA C:GLY301 4.8 54.8 1.0 CA C:GLY13 4.8 60.8 1.0 NE2 C:GLN137 4.8 53.6 1.0 OD1 C:ASP11 4.9 62.3 1.0 O1A C:ADP401 4.9 58.8 1.0 CG C:ASP11 5.0 62.3 1.0 CG C:GLN137 5.0 53.6 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724