Atomistry » Magnesium » PDB 8eae-8elr » 8egd
Atomistry »
  Magnesium »
    PDB 8eae-8elr »
      8egd »

Magnesium in PDB 8egd: Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor

Enzymatic activity of Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor

All present enzymatic activity of Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor:
2.7.11.4;

Protein crystallography data

The structure of Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor, PDB code: 8egd was solved by S.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 96.96 / 2.05
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 111.96, 111.96, 137.18, 90, 90, 120
R / Rfree (%) 23.9 / 26.5

Other elements in 8egd:

The structure of Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor also contains other interesting chemical elements:

Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor (pdb code 8egd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor, PDB code: 8egd:

Magnesium binding site 1 out of 1 in 8egd

Go back to Magnesium Binding Sites List in 8egd
Magnesium binding site 1 out of 1 in the Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Branched Chain Ketoacid Dehydrogenase Kinase in Complex with Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:67.0
occ:1.00
 OE1 A:GLU245 2.4 58.4 1.0
CE A:LYS248 2.9 61.8 1.0
NZ A:LYS248 2.9 63.9 1.0
OD1 A:ASN249 3.0 47.2 1.0
O1B A:ADP401 3.0 64.9 1.0
O1A A:ADP401 3.2 61.3 1.0
O A:GLU245 3.3 43.1 1.0
CD A:GLU245 3.6 60.2 1.0
CG A:ASN249 3.7 45.7 1.0
CB A:GLU245 3.7 47.4 1.0
CA A:GLU245 3.7 44.4 1.0
ND2 A:ASN249 3.8 43.9 1.0
CA A:GLY339 3.8 46.2 1.0
C A:GLU245 3.9 43.1 1.0
CG A:GLU245 4.1 53.3 1.0
PB A:ADP401 4.2 65.0 1.0
CD A:LYS248 4.2 57.6 1.0
PA A:ADP401 4.4 61.4 1.0
O3A A:ADP401 4.4 63.6 1.0
N A:GLY339 4.6 47.2 1.0
O3B A:ADP401 4.6 65.5 1.0
OE2 A:GLU245 4.6 64.2 1.0
CB A:LYS248 4.6 46.5 1.0
C A:GLY339 4.7 45.5 1.0
CG A:LYS248 4.9 52.7 1.0
N A:ASN249 4.9 42.3 1.0
NH2 A:ARG252 4.9 72.7 1.0
CB A:ASN249 5.0 42.3 1.0

Reference:

S.Liu, B.L.Kormos, J.D.Knafels, P.V.Sahasrabudhe, A.Rosado, R.F.Sommese, A.R.Reyes, J.Ward, R.J.Roth Flach, X.Wang, L.M.Buzon, M.R.Reese, S.K.Bhattacharya, K.Omoto, K.J.Filipski. Structural Studies Identify Angiotensin II Receptor Blocker-Like Compounds As Branched-Chain Ketoacid Dehydrogenase Kinase Inhibitors. J.Biol.Chem. V. 299 02959 2023.
ISSN: ESSN 1083-351X
PubMed: 36717078
DOI: 10.1016/J.JBC.2023.102959
Page generated: Fri Oct 4 01:13:30 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy