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Magnesium in PDB 8saa: Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form)

Enzymatic activity of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form)

All present enzymatic activity of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form):
4.4.1.8;

Protein crystallography data

The structure of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form), PDB code: 8saa was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.48 / 1.45
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.092, 131.708, 82.624, 90, 104.41, 90
R / Rfree (%) 14.3 / 16

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form) (pdb code 8saa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form), PDB code: 8saa:

Magnesium binding site 1 out of 1 in 8saa

Go back to Magnesium Binding Sites List in 8saa
Magnesium binding site 1 out of 1 in the Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:27.1
occ:1.00
 O A:ALA362 2.3 28.5 1.0
O A:HOH828 2.3 41.9 1.0
O A:ARG359 2.3 21.9 1.0
O A:ALA356 2.4 20.9 1.0
O A:HOH814 2.5 34.6 1.0
O A:HOH813 2.7 40.2 1.0
C A:ARG359 3.4 21.4 1.0
C A:ALA356 3.4 20.8 1.0
C A:ALA362 3.5 26.6 1.0
N A:ALA362 3.7 24.8 1.0
O A:HOH864 4.1 37.6 1.0
CA A:ARG359 4.1 17.9 1.0
CB A:ARG359 4.1 19.5 1.0
CA A:ALA356 4.1 20.2 1.0
N A:ARG359 4.2 19.2 1.0
CA A:ALA362 4.2 22.6 1.0
N A:GLU361 4.2 26.1 1.0
N A:PRO360 4.3 19.1 1.0
CA A:PRO360 4.4 21.6 1.0
CB A:ALA356 4.4 20.8 1.0
N A:ALA357 4.5 19.3 1.0
C A:PRO360 4.5 24.6 1.0
O A:HOH700 4.5 35.8 1.0
N A:GLU363 4.5 28.1 1.0
CA A:ALA357 4.7 22.4 1.0
C A:GLU361 4.8 27.7 1.0
OE1 A:GLU363 4.8 41.1 1.0
CA A:GLU363 4.8 27.1 1.0
C A:ALA357 4.8 22.3 1.0
OE2 A:GLU363 4.9 51.8 1.0
CB A:ALA362 4.9 25.3 1.0
CD A:GLU363 5.0 42.8 1.0
CA A:GLU361 5.0 26.5 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile, A.Cooper. Crystal Structure of Cystathionine Beta Lyase From Klebsiella Aerogenes, Plp and Phosphate Bound (C2 Form) To Be Published.
Page generated: Fri Aug 15 15:30:11 2025

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