Magnesium in PDB 9dh6: State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+

The binding sites of Magnesium atom in the State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ (pdb code 9dh6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+, PDB code: 9dh6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:52.2 occ:1.00 O2B A:ADP4701 2.0 52.7 1.0 O1B A:ADP4701 2.1 52.7 1.0 PB A:ADP4701 2.4 52.7 1.0 OG1 A:THR1913 2.7 51.0 1.0 O2A A:ADP4701 2.8 52.7 1.0 O3A A:ADP4701 3.2 52.7 1.0 CB A:THR1913 3.3 51.0 1.0 PA A:ADP4701 3.4 52.7 1.0 NH2 A:ARG2091 3.7 51.8 1.0 O3B A:ADP4701 3.7 52.7 1.0 NH2 A:ARG2358 3.9 50.8 1.0 N A:THR1913 3.9 51.0 1.0 O1A A:ADP4701 4.0 52.7 1.0 CA A:THR1913 4.3 51.0 1.0 OD2 A:ASP2320 4.4 56.3 1.0 CG2 A:THR1913 4.5 51.0 1.0 OE2 A:GLU1959 4.9 56.2 1.0 CB A:LYS1912 4.9 48.0 1.0 O5' A:ADP4701 4.9 52.7 1.0 OG1 A:THR2017 4.9 48.8 1.0 OD2 A:ASP1958 5.0 54.1 1.0 CZ A:ARG2091 5.0 51.8 1.0

Magnesium binding site 2 out of 2 in the State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of State-2 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:50.7 occ:1.00 O2B A:ATP4702 1.9 55.9 1.0 O2G A:ATP4702 1.9 55.9 1.0 OG A:SER2231 2.1 50.3 1.0 O3B A:ATP4702 2.4 55.9 1.0 PB A:ATP4702 2.5 55.9 1.0 O1A A:ATP4702 2.7 55.9 1.0 PG A:ATP4702 2.7 55.9 1.0 CB A:SER2231 3.0 50.3 1.0 O3A A:ATP4702 3.0 55.9 1.0 OE2 A:GLU2344 3.1 49.9 1.0 PA A:ATP4702 3.3 55.9 1.0 N A:SER2231 3.5 50.3 1.0 O3G A:ATP4702 3.6 55.9 1.0 CA A:SER2231 3.8 50.3 1.0 O2A A:ATP4702 3.9 55.9 1.0 O1G A:ATP4702 3.9 55.9 1.0 O1B A:ATP4702 3.9 55.9 1.0 CD A:GLU2344 3.9 49.9 1.0 OE2 A:GLU2688 4.5 49.5 1.0 OE1 A:GLU2344 4.5 49.9 1.0 NH1 A:ARG2729 4.6 48.8 1.0 C A:LYS2230 4.7 48.3 1.0 O5' A:ATP4702 4.7 55.9 1.0 N A:LYS2230 4.8 48.3 1.0 NH2 A:ARG2726 4.8 51.2 1.0 CB A:LYS2230 4.8 48.3 1.0 CG A:GLU2344 4.8 49.9 1.0 CE A:LYS2230 4.9 48.3 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.