Magnesium in PDB 9dh7: State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+

The binding sites of Magnesium atom in the State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ (pdb code 9dh7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+, PDB code: 9dh7:

Magnesium binding site 1 out of 1 in the State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-4 of the Motor Domain From Full-Length Human Dynein-1 in 5MM Amppnp with 5MM MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:2.7 occ:1.00 OG A:SER2231 1.9 3.2 1.0 OE2 A:GLU2344 2.0 5.0 1.0 O2G A:ATP4702 2.1 5.5 1.0 O2B A:ATP4702 2.7 3.5 1.0 CD A:GLU2344 3.1 5.2 1.0 CB A:SER2231 3.2 2.4 1.0 PG A:ATP4702 3.3 3.2 1.0 O3B A:ATP4702 3.3 2.5 1.0 O1A A:ATP4702 3.4 7.5 1.0 OE1 A:GLU2344 3.5 10.2 1.0 PB A:ATP4702 3.6 2.1 1.0 OD2 A:ASP2304 3.9 13.3 1.0 NH2 A:ARG2684 3.9 8.2 1.0 NH2 A:ARG2726 4.1 3.5 1.0 CA A:SER2231 4.2 2.4 1.0 N A:SER2231 4.2 2.9 1.0 O3G A:ATP4702 4.2 3.8 1.0 O1G A:ATP4702 4.4 5.0 1.0 CG A:GLU2344 4.4 4.5 1.0 O3A A:ATP4702 4.4 2.0 1.0 NH1 A:ARG2729 4.4 5.2 1.0 PA A:ATP4702 4.5 3.0 1.0 OD1 A:ASP2304 4.5 11.0 1.0 OE2 A:GLU2688 4.6 26.3 1.0 CG A:ASP2304 4.6 10.8 1.0 CD A:GLU2688 4.9 22.4 1.0 O1B A:ATP4702 4.9 3.2 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.