Magnesium in PDB 6ut8: Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc

The binding sites of Magnesium atom in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc (pdb code 6ut8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc, PDB code: 6ut8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:8.6 occ:1.00 OG1 A:THR222 2.2 12.8 1.0 O3B A:GDP701 2.6 17.3 1.0 OD1 A:ASP356 2.7 7.8 1.0 OD2 A:ASP356 3.1 7.8 1.0 CG A:ASP356 3.2 7.8 1.0 CB A:THR222 3.6 12.8 1.0 CG2 A:THR408 3.8 7.2 1.0 PB A:GDP701 3.9 17.3 1.0 O1B A:GDP701 4.1 17.3 1.0 O1A A:GDP701 4.2 17.3 1.0 CG2 A:THR222 4.3 12.8 1.0 CA A:THR222 4.5 12.8 1.0 N A:THR222 4.5 12.8 1.0 CB A:ASP356 4.7 7.8 1.0 O2B A:GDP701 4.8 17.3 1.0 CB A:THR408 4.9 7.2 1.0 CG A:GLU357 5.0 10.8 1.0 PA A:GDP701 5.0 17.3 1.0

Magnesium binding site 2 out of 6 in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:6.5 occ:1.00 O1B B:GSP701 2.2 14.5 1.0 O2G B:GSP701 2.2 14.5 1.0 OG1 B:THR222 2.2 8.3 1.0 PB B:GSP701 3.1 14.5 1.0 OD1 B:ASP356 3.1 8.4 1.0 O2B B:GSP701 3.2 14.5 1.0 OD2 B:ASP356 3.2 8.4 1.0 CB B:THR222 3.2 8.3 1.0 PG B:GSP701 3.3 14.5 1.0 CG B:ASP356 3.6 8.4 1.0 O3G B:GSP701 3.6 14.5 1.0 O3B B:GSP701 3.7 14.5 1.0 CG2 B:THR222 4.0 8.3 1.0 OG1 B:THR408 4.0 7.9 1.0 OE2 B:GLU357 4.1 12.2 1.0 OG1 C:THR372 4.1 7.0 1.0 NH2 C:ARG426 4.2 5.2 1.0 CA B:THR222 4.4 8.3 1.0 O3A B:GSP701 4.5 14.5 1.0 CB C:THR372 4.5 7.0 1.0 N B:THR222 4.6 8.3 1.0 S1G B:GSP701 4.8 14.5 1.0 CB B:THR408 4.8 7.9 1.0 O2A B:GSP701 5.0 14.5 1.0

Magnesium binding site 3 out of 6 in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg702 b:1.0 occ:1.00 OG1 C:THR222 2.1 4.8 1.0 OD2 C:ASP356 2.2 4.2 1.0 O2G C:GSP701 2.3 4.8 1.0 O2B C:GSP701 2.4 4.8 1.0 CG C:ASP356 3.0 4.2 1.0 OD1 C:ASP356 3.0 4.2 1.0 CB C:THR222 3.4 4.8 1.0 PB C:GSP701 3.6 4.8 1.0 NH2 D:ARG426 3.6 4.1 1.0 PG C:GSP701 3.6 4.8 1.0 O1B C:GSP701 3.9 4.8 1.0 CG2 C:THR222 4.0 4.8 1.0 O3G C:GSP701 4.1 4.8 1.0 O3B C:GSP701 4.1 4.8 1.0 OG1 C:THR408 4.2 4.6 1.0 CB C:ASP356 4.4 4.2 1.0 CG2 D:THR372 4.5 2.2 1.0 CA C:THR222 4.5 4.8 1.0 CB D:THR372 4.5 2.2 1.0 OE1 C:GLU357 4.6 4.1 1.0 N C:THR222 4.6 4.8 1.0 CG C:GLU357 4.7 4.1 1.0 CZ D:ARG426 4.8 4.1 1.0 CD C:GLU357 4.9 4.1 1.0 O2A C:GSP701 4.9 4.8 1.0 O3A C:GSP701 4.9 4.8 1.0 S1G C:GSP701 4.9 4.8 1.0

Magnesium binding site 4 out of 6 in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:13.4 occ:1.00 OG1 D:THR222 2.1 4.1 1.0 O2G D:GSP701 2.2 3.7 1.0 OD2 D:ASP356 2.7 13.4 1.0 O2B D:GSP701 2.8 3.7 1.0 OD1 D:ASP356 2.8 13.4 1.0 CG D:ASP356 3.1 13.4 1.0 CB D:THR222 3.4 4.1 1.0 OG1 E:THR372 3.6 4.9 1.0 NH1 E:ARG426 3.6 4.5 1.0 PG D:GSP701 3.7 3.7 1.0 OE2 D:GLU357 3.7 8.3 1.0 OG1 D:THR408 4.0 9.1 1.0 PB D:GSP701 4.0 3.7 1.0 CG2 D:THR222 4.0 4.1 1.0 O3B D:GSP701 4.2 3.7 1.0 CB E:THR372 4.2 4.9 1.0 O3G D:GSP701 4.5 3.7 1.0 CA D:THR222 4.6 4.1 1.0 O1B D:GSP701 4.6 3.7 1.0 N D:THR222 4.6 4.1 1.0 CB D:ASP356 4.6 13.4 1.0 CD D:GLU357 4.7 8.3 1.0 S1G D:GSP701 4.8 3.7 1.0 CZ E:ARG426 4.8 4.5 1.0 CA E:THR372 4.9 4.9 1.0 CG D:GLU357 4.9 8.3 1.0

Magnesium binding site 5 out of 6 in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg702 b:7.8 occ:1.00 OG1 E:THR222 2.1 8.9 1.0 OD1 E:ASP356 2.4 13.4 1.0 O3G E:GSP701 2.5 13.4 1.0 O1B E:GSP701 2.8 13.4 1.0 CG E:ASP356 3.1 13.4 1.0 OD2 E:ASP356 3.2 13.4 1.0 CB E:THR222 3.4 8.9 1.0 OE2 E:GLU357 3.5 10.5 1.0 PB E:GSP701 3.9 13.4 1.0 NH2 F:ARG426 3.9 5.5 1.0 O2B E:GSP701 3.9 13.4 1.0 PG E:GSP701 3.9 13.4 1.0 OG1 E:THR408 4.1 6.2 1.0 CG2 E:THR222 4.1 8.9 1.0 CG2 F:THR372 4.2 3.8 1.0 CG E:GLU357 4.3 10.5 1.0 CD E:GLU357 4.3 10.5 1.0 CA E:THR222 4.5 8.9 1.0 O3B E:GSP701 4.5 13.4 1.0 CB E:ASP356 4.6 13.4 1.0 N E:THR222 4.7 8.9 1.0 O2G E:GSP701 4.7 13.4 1.0 O F:ILE371 4.7 3.6 1.0 CB F:THR372 4.7 3.8 1.0 CA F:THR372 4.9 3.8 1.0 O E:THR408 4.9 6.2 1.0 N E:GLU357 4.9 10.5 1.0

Magnesium binding site 6 out of 6 in the Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Refined Half-Complex From Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg702 b:6.9 occ:1.00 O2B F:GDP701 2.2 7.7 1.0 OG1 F:THR222 2.2 6.5 1.0 OD1 F:ASP356 3.4 5.5 1.0 PB F:GDP701 3.4 7.7 1.0 CB F:THR222 3.6 6.5 1.0 O3B F:GDP701 3.7 7.7 1.0 OD2 F:ASP356 3.9 5.5 1.0 ND2 F:ASN410 4.0 6.4 1.0 CG F:ASP356 4.1 5.5 1.0 O1B F:GDP701 4.2 7.7 1.0 CG2 F:THR222 4.2 6.5 1.0 OD1 F:ASN410 4.3 6.4 1.0 O2A F:GDP701 4.3 7.7 1.0 OG1 F:THR408 4.4 6.4 1.0 NZ F:LYS221 4.5 5.6 1.0 NH2 A:ARG426 4.6 13.2 1.0 CG F:ASN410 4.6 6.4 1.0 N F:THR222 4.6 6.5 1.0 CA F:THR222 4.6 6.5 1.0 O3A F:GDP701 4.7 7.7 1.0 CG F:GLU357 4.8 5.6 1.0 PA F:GDP701 4.9 7.7 1.0 OE2 A:GLU375 4.9 17.9 1.0 OE2 F:GLU357 4.9 5.6 1.0 O1A F:GDP701 4.9 7.7 1.0

Y.Niu, H.Suzuki, C.J.Hosford, T.Walz, J.S.Chappie. Structural Asymmetry Governs the Assembly and Gtpase Activity of Mcrbc Restriction Complexes To Be Published.