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Magnesium in PDB, part 188 (files: 7481-7520), PDB 4dn1-4dv2

Experimental structures of coordination spheres of Magnesium (Mg) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Magnesium atoms. PDB files: 7481-7520 (PDB 4dn1-4dv2).
  1. 4dn1 (Mg: 2) - Crystal Structure of An Enolase (Mandelate Racemase Subgroup Member) From Agrobacterium Tumefaciens (Target Efi-502088) with Bound Mg and Formate
    Other atoms: Cl (2);
  2. 4dn5 (Mg: 2) - Crystal Structure of Nf-Kb-Inducing Kinase (Nik)
  3. 4do9 (Mg: 1) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Stereoselective Binding of R-Isomer
    Other atoms: F (1); Cl (5); Na (3);
  4. 4doa (Mg: 1) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Non-Interactive Binding of S-Isomer
    Other atoms: F (1); Cl (5); Na (3);
  5. 4dob (Mg: 1) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate: Stereoselective Binding of R-Isomer
    Other atoms: Cl (6); Na (3);
  6. 4doc (Mg: 1) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate:Binding of S-Isomer
    Other atoms: Cl (6); Na (3);
  7. 4dpg (Mg: 12) - Crystal Structure of Human Lysrs: P38/AIMP2 Complex I
  8. 4dpm (Mg: 6) - Structure of Malonyl-Coenzyme A Reductase From Crenarchaeota in Complex with Coa
  9. 4dpv (Mg: 4) - Parvovirus/Dna Complex
  10. 4dqi (Mg: 2) - Ternary Complex of Bacillus Dna Polymerase I Large Fragment, Dna Duplex, and Dctp (Paired with Dg of Template)
  11. 4dqp (Mg: 2) - Ternary Complex of Bacillus Dna Polymerase I Large Fragment, Dna Duplex, and Ddctp (Paired with Dg of Template)
  12. 4dqq (Mg: 1) - Ternary Complex of Bacillus Dna Polymerase I Large Fragment E658A, Dna Duplex, and Rctp (Paired with Dg of Template) in Presence of MG2+
  13. 4dr1 (Mg: 254) - Crystal Structure of the Apo 30S Ribosomal Subunit From Thermus Thermophilus (HB8)
    Other atoms: Zn (2);
  14. 4dr2 (Mg: 327) - Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Multiple Copies of Paromomycin Molecules Bound
    Other atoms: Zn (2);
  15. 4dr3 (Mg: 264) - Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Streptomycin Bound
    Other atoms: Zn (2);
  16. 4dr4 (Mg: 363) - Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Codon, Cognate Transfer Rna Anticodon Stem-Loop and Multiple Copies of Paromomycin Molecules Bound
    Other atoms: Zn (2);
  17. 4dr5 (Mg: 272) - Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Codon, Crystallographically Disordered Cognate Transfer Rna Anticodon Stem-Loop and Streptomycin Bound
    Other atoms: Zn (2);
  18. 4dr6 (Mg: 377) - Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Codon, Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched at the First Codon Position and Streptomycin Bound
    Other atoms: Zn (2);
  19. 4dr7 (Mg: 344) - Crystal Structure of the Thermus Thermophilus (HB8) 30S Ribosomal Subunit with Codon, Crystallographically Disordered Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched at the Second Codon Position, and Streptomycin Bound
    Other atoms: Zn (2);
  20. 4drx (Mg: 4) - Gtp-Tubulin in Complex with A Darpin
  21. 4ds6 (Mg: 16) - Crystal Structure of A Group II Intron in the Pre-Catalytic State
  22. 4dsc (Mg: 2) - Complex Structure of Abscisic Acid Receptor PYL3 with (+)-Aba in Spacegroup of H32 at 1.95A
  23. 4dsn (Mg: 2) - Small-Molecule Ligands Bind to A Distinct Pocket in Ras and Inhibit Sos-Mediated Nucleotide Exchange Activity
  24. 4dso (Mg: 1) - Small-Molecule Ligands Bind to A Distinct Pocket in Ras and Inhibit Sos-Mediated Nucleotide Exchange Activity
  25. 4dst (Mg: 2) - Small-Molecule Ligands Bind to A Distinct Pocket in Ras and Inhibit Sos-Mediated Nucleotide Exchange Activity
    Other atoms: Cl (2);
  26. 4dsu (Mg: 1) - Small-Molecule Ligands Bind to A Distinct Pocket in Ras and Inhibit Sos-Mediated Nucleotide Exchange Activity
  27. 4dtf (Mg: 2) - Structure of A Vgrg Vibrio Cholerae Toxin Acd Domain in Complex with Amp-Pnp and Mg++
  28. 4dth (Mg: 2) - Structure of A Vgrg Vibrio Cholerae Toxin Acd Domain in Complex with Atp and Mg++
  29. 4dtw (Mg: 1) - Cytochrome P450 BM3H-8C8 Mri Sensor Bound to Serotonin
    Other atoms: Fe (2);
  30. 4dty (Mg: 1) - Cytochrome P450 BM3H-8C8 Mri Sensor, No Ligand
    Other atoms: Fe (2);
  31. 4dug (Mg: 12) - Crystal Structure of Circadian Clock Protein Kaic E318A Mutant
  32. 4duo (Mg: 2) - Room-Temperature X-Ray Structure of D-Xylose Isomerase in Complex with 2MG2+ Ions and Xylitol at pH 7.7
  33. 4duv (Mg: 9) - E. Coli (Lacz) Beta-Galactosidase (G974A) 2-Deoxy-Galactosyl-Enzyme and Bis-Tris Complex
    Other atoms: Na (16);
  34. 4duw (Mg: 10) - E. Coli (Lacz) Beta-Galactosidase (G974A) in Complex with Allolactose
    Other atoms: Na (16);
  35. 4dux (Mg: 8) - E. Coli (Lacz) Beta-Galactosidase (N460S) in Complex with L-Ribose
    Other atoms: Na (14);
  36. 4duy (Mg: 312) - Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit with A 16S Rrna Mutation, U13C
    Other atoms: Zn (2);
  37. 4duz (Mg: 267) - Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit with A 16S Rrna Mutation, U13C, Bound with Streptomycin
    Other atoms: Zn (2);
  38. 4dv0 (Mg: 277) - Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit with A 16S Rrna Mutation, U20G
    Other atoms: Zn (2);
  39. 4dv1 (Mg: 247) - Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit with A 16S Rrna Mutation, U20G, Bound with Streptomycin
    Other atoms: Zn (2);
  40. 4dv2 (Mg: 289) - Crystal Structure of the Thermus Thermophilus 30S Ribosomal Subunit with A 16S Rrna Mutation, C912A
    Other atoms: Zn (2);
Page generated: Thu Dec 17 12:15:40 2020

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