Magnesium in PDB 8z1r: Isocitrate Lyase MOMCL1

The structure of Isocitrate Lyase MOMCL1, PDB code: 8z1r was solved by X.H.Liu, W.H.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.81 / 1.82
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	118.43, 150.495, 128.243, 90, 90, 90
R / Rfree (%)	18.4 / 21.5

The binding sites of Magnesium atom in the Isocitrate Lyase MOMCL1 (pdb code 8z1r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Isocitrate Lyase MOMCL1, PDB code: 8z1r:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Isocitrate Lyase MOMCL1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Isocitrate Lyase MOMCL1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:39.2 occ:1.00 O A:HOH1001 2.1 46.3 1.0 O A:HOH855 2.1 33.2 1.0 O A:HOH876 2.1 44.9 1.0 O A:HOH908 2.1 41.7 1.0 OD1 A:ASP238 2.2 31.2 1.0 OD2 A:ASP236 2.2 32.3 1.0 CG A:ASP236 3.2 26.3 1.0 OD1 A:ASP236 3.4 22.3 1.0 CG A:ASP238 3.4 24.4 1.0 OD2 A:ASP182 3.7 52.4 1.0 CA A:GLY166 4.2 27.7 1.0 OH A:TYR186 4.3 26.4 1.0 OD2 A:ASP238 4.3 25.1 1.0 CB A:ASP238 4.3 22.0 1.0 CA A:ASP238 4.4 20.8 1.0 N A:TRP167 4.4 31.9 1.0 OD1 A:ASP182 4.5 48.3 1.0 C A:GLY166 4.5 31.5 1.0 CG A:ASP182 4.5 48.5 1.0 CB A:ASP236 4.5 21.1 1.0 N A:GLY166 4.6 26.8 1.0 OE1 A:GLU265 4.6 38.5 1.0 N A:ASP238 4.8 20.9 1.0 OE2 A:GLU265 4.8 45.8 1.0

Magnesium binding site 2 out of 2 in the Isocitrate Lyase MOMCL1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Isocitrate Lyase MOMCL1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg703 b:35.6 occ:1.00 O B:HOH1067 2.1 68.5 1.0 O B:HOH869 2.1 50.1 1.0 O B:HOH872 2.1 33.4 1.0 O B:HOH1113 2.1 44.8 1.0 OD1 B:ASP238 2.1 25.5 1.0 OD2 B:ASP236 2.3 31.4 1.0 CG B:ASP236 3.3 22.4 1.0 CG B:ASP238 3.4 23.2 1.0 OD1 B:ASP236 3.5 18.1 1.0 OD2 B:ASP182 3.9 43.4 1.0 O B:HOH935 4.0 45.9 1.0 OH B:TYR186 4.1 26.6 1.0 O B:HOH1083 4.2 52.4 1.0 OD2 B:ASP238 4.2 24.4 1.0 OD1 B:ASP182 4.3 39.1 1.0 CB B:ASP238 4.3 18.0 1.0 CA B:GLY166 4.3 24.4 1.0 CA B:ASP238 4.3 20.1 1.0 N B:TRP167 4.4 28.1 1.0 C B:GLY166 4.5 29.9 1.0 CG B:ASP182 4.5 43.5 1.0 OE2 B:GLU265 4.6 39.2 1.0 CB B:ASP236 4.6 19.0 1.0 N B:GLY166 4.7 25.6 1.0 OE1 B:GLU265 4.7 32.0 1.0 N B:ASP238 4.8 18.6 1.0

X.H.Liu, W.H.Zhao. High-Resolution Crystal Structure of the MOMCL1 Protein To Be Published.