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Magnesium in PDB 5vw8: Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group

Enzymatic activity of Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group

All present enzymatic activity of Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group:
1.18.1.2;

Protein crystallography data

The structure of Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group, PDB code: 5vw8 was solved by K.M.Kean, R.A.Carpenter, A.R.Hall, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.30 / 1.81
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 58.867, 58.867, 185.036, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 21

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group (pdb code 5vw8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group, PDB code: 5vw8:

Magnesium binding site 1 out of 1 in 5vw8

Go back to Magnesium Binding Sites List in 5vw8
Magnesium binding site 1 out of 1 in the Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nadp+ Soak of Y316S Mutant of Corn Root Ferredoxin:Nadp+ Reductase in Alternate Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:44.7
occ:1.00
 O A:HOH666 2.0 45.9 1.0
O A:HOH560 2.0 31.3 1.0
O A:HOH716 2.0 40.3 1.0
O A:HOH761 2.2 38.2 1.0
O A:HOH751 2.2 43.4 1.0
O A:HOH563 2.2 34.6 1.0
HA A:ASP211 3.8 39.2 1.0
O A:HOH555 3.9 33.9 1.0
O A:HOH742 4.0 59.7 1.0
HA A:VAL45 4.1 30.5 1.0
HB2 A:LEU213 4.1 42.9 1.0
O A:ASP211 4.3 29.6 1.0
O A:SER210 4.3 29.0 1.0
O A:LEU44 4.3 27.3 1.0
O A:LEU213 4.3 24.7 1.0
H A:GLY46 4.4 40.6 1.0
O A:HOH525 4.6 42.7 1.0
CA A:ASP211 4.6 32.7 1.0
N A:GLY46 4.6 33.8 1.0
C A:ASP211 4.7 31.6 1.0
H A:LEU213 4.7 31.9 1.0
HA3 A:GLY46 4.8 48.3 1.0
O A:HOH593 4.9 25.0 1.0
CA A:VAL45 4.9 25.4 1.0
OE2 A:GLU217 5.0 56.6 1.0
C A:VAL45 5.0 24.8 1.0

Reference:

K.M.Kean, R.A.Carpenter, V.Pandini, G.Zanetti, A.R.Hall, R.Faber, A.Aliverti, P.A.Karplus. High-Resolution Studies of Hydride Transfer in the Ferredoxin:Nadp(+) Reductase Superfamily. Febs J. V. 284 3302 2017.
ISSN: ISSN 1742-4658
PubMed: 28783258
DOI: 10.1111/FEBS.14190
Page generated: Mon Sep 30 06:21:52 2024

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