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Magnesium in PDB 5ytf: Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da
Enzymatic activity of Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da
All present enzymatic activity of Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da, PDB code: 5ytf
was solved by
H.Zeng,
M.Mondal,
R.Y.Song,
J.Zhang,
B.Xia,
Y.Q.Gao,
C.Q.Yi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 93.26 / 1.98 |
| Space group | P 31 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 107.690, 107.690, 90.319, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 18.1 / 23.3 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da
(pdb code 5ytf). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da, PDB code: 5ytf:
Jump to Magnesium binding site number: 1; 2; 3;
In total 3 binding sites of Magnesium where determined in the Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da, PDB code: 5ytf:
Jump to Magnesium binding site number: 1; 2; 3;
Magnesium binding site 1 out of 3 in 5ytf
Go back to
Magnesium Binding Sites List in 5ytf
Magnesium binding site 1 out
of 3 in the Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da within 5.0Å range:
|
Magnesium binding site 2 out of 3 in 5ytf
Go back to
Magnesium Binding Sites List in 5ytf
Magnesium binding site 2 out
of 3 in the Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da within 5.0Å range:
|
Magnesium binding site 3 out of 3 in 5ytf
Go back to
Magnesium Binding Sites List in 5ytf
Magnesium binding site 3 out
of 3 in the Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Large Fragment of Dna Polymerase I From Thermus Aquaticus Host-Guest Complex with the Unnatural Base M-Fc Pair with Da within 5.0Å range:
|
Reference:
H.Zeng,
M.Mondal,
R.Song,
J.Zhang,
B.Xia,
M.Liu,
C.Zhu,
B.He,
Y.Q.Gao,
C.Yi.
Unnatural Cytosine Bases Recognized As Thymines By Dna Polymerases By the Formation of the Watson-Crick Geometry. Angew. Chem. Int. Ed. Engl. V. 58 130 2019.
ISSN: ESSN 1521-3773
PubMed: 30407705
DOI: 10.1002/ANIE.201807845
Page generated: Wed Aug 13 01:05:19 2025
ISSN: ESSN 1521-3773
PubMed: 30407705
DOI: 10.1002/ANIE.201807845
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