Atomistry » Magnesium » PDB 6ojf-6oqz » 6okh
Atomistry »
  Magnesium »
    PDB 6ojf-6oqz »
      6okh »

Magnesium in PDB 6okh: Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)

Protein crystallography data

The structure of Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197), PDB code: 6okh was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.84 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.880, 101.120, 108.660, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 20

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) (pdb code 6okh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197), PDB code: 6okh:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6okh

Go back to Magnesium Binding Sites List in 6okh
Magnesium binding site 1 out of 4 in the Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg200

b:13.9
occ:1.00
OD2 A:ASP79 2.1 14.9 1.0
O A:HOH323 2.1 17.4 1.0
O A:HOH312 2.1 15.5 1.0
O A:ILE106 2.1 16.1 1.0
O A:HOH318 2.1 15.5 1.0
NE2 A:HIS38 2.2 16.6 1.0
CG A:ASP79 3.0 18.7 1.0
CE1 A:HIS38 3.2 17.1 1.0
CD2 A:HIS38 3.2 19.7 1.0
C A:ILE106 3.3 15.6 1.0
OD1 A:ASP79 3.3 17.8 1.0
MG A:MG201 3.6 36.1 1.0
N A:ILE106 3.8 11.1 1.0
CA A:ILE106 3.9 11.6 1.0
CB A:ILE106 4.0 16.1 1.0
O A:HOH373 4.1 30.8 1.0
OD2 A:ASP115 4.2 16.6 1.0
OG A:SER108 4.2 17.1 0.6
O A:HOH313 4.2 17.8 1.0
O A:HOH303 4.3 40.3 1.0
ND1 A:HIS38 4.3 15.6 1.0
O A:HOH334 4.4 16.7 1.0
N A:LEU107 4.4 13.9 1.0
CG A:HIS38 4.4 18.3 1.0
CB A:ASP79 4.4 13.9 1.0
OE1 A:GLU105 4.4 14.8 1.0
O A:HOH439 4.6 39.4 1.0
CA A:LEU107 4.6 15.9 1.0
C A:LEU107 4.7 22.9 1.0
C A:GLU105 4.8 11.0 1.0
N A:SER108 4.8 18.0 1.0
CG2 A:ILE106 4.9 13.3 1.0
CG1 A:ILE106 5.0 21.4 1.0

Magnesium binding site 2 out of 4 in 6okh

Go back to Magnesium Binding Sites List in 6okh
Magnesium binding site 2 out of 4 in the Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:36.1
occ:1.00
O A:HOH334 2.2 16.7 1.0
O A:HOH397 2.2 27.5 1.0
O A:HOH316 2.3 22.9 1.0
O A:HOH318 2.5 15.5 1.0
O A:HOH373 2.7 30.8 1.0
O A:HOH312 2.7 15.5 1.0
O A:HOH323 3.5 17.4 1.0
MG A:MG200 3.6 13.9 1.0
NZ A:LYS119 3.9 16.2 1.0
O A:HOH322 4.0 35.3 1.0
O A:HOH374 4.1 36.9 1.0
OE1 A:GLU105 4.1 14.8 1.0
OD1 A:ASP115 4.2 17.4 1.0
OD2 A:ASP115 4.3 16.6 1.0
OE1 A:GLU22 4.3 34.6 1.0
O A:HOH439 4.3 39.4 1.0
OD1 A:ASN111 4.4 40.7 1.0
CG2 A:VAL31 4.4 53.3 1.0
OD1 A:ASP79 4.4 17.8 1.0
OD2 A:ASP79 4.5 14.9 1.0
O A:GLN77 4.5 17.4 1.0
O A:HOH313 4.6 17.8 1.0
CG A:ASP115 4.7 17.4 1.0
CG A:ASP79 4.8 18.7 1.0
OE2 A:GLU22 4.8 21.7 1.0
CD A:GLU105 4.9 14.3 1.0
CD A:GLU22 4.9 28.7 1.0

Magnesium binding site 3 out of 4 in 6okh

Go back to Magnesium Binding Sites List in 6okh
Magnesium binding site 3 out of 4 in the Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg200

b:18.1
occ:1.00
OD2 B:ASP79 2.1 16.6 1.0
O B:HOH338 2.1 18.1 1.0
O B:ILE106 2.2 17.7 1.0
O B:HOH313 2.2 17.2 1.0
NE2 B:HIS38 2.3 20.8 1.0
O B:HOH314 2.3 19.5 1.0
CG B:ASP79 3.0 19.2 1.0
CE1 B:HIS38 3.2 20.5 1.0
C B:ILE106 3.3 18.3 1.0
OD1 B:ASP79 3.3 19.1 1.0
CD2 B:HIS38 3.3 16.2 1.0
MG B:MG201 3.5 31.6 1.0
N B:ILE106 3.7 15.4 1.0
CA B:ILE106 3.9 16.0 1.0
O B:HOH399 4.0 28.7 1.0
O B:HOH303 4.0 30.1 1.0
CB B:ILE106 4.0 20.1 1.0
OD2 B:ASP115 4.2 18.9 1.0
O B:HOH335 4.3 18.0 1.0
O B:HOH333 4.3 19.5 1.0
ND1 B:HIS38 4.3 19.4 1.0
OG B:SER108 4.3 36.8 1.0
N B:LEU107 4.4 18.4 1.0
CB B:ASP79 4.4 14.3 1.0
OE1 B:GLU105 4.4 14.6 1.0
CG B:HIS38 4.4 15.8 1.0
C B:LEU107 4.7 26.2 1.0
CA B:LEU107 4.7 20.2 1.0
O B:HOH408 4.7 35.0 1.0
C B:GLU105 4.8 16.9 1.0
N B:SER108 4.9 19.9 1.0
CG2 B:ILE106 4.9 18.0 1.0
CG1 B:ILE106 5.0 27.3 1.0

Magnesium binding site 4 out of 4 in 6okh

Go back to Magnesium Binding Sites List in 6okh
Magnesium binding site 4 out of 4 in the Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:31.6
occ:1.00
O B:HOH335 2.2 18.0 1.0
O B:HOH423 2.3 31.6 1.0
O B:HOH325 2.4 30.5 1.0
O B:HOH314 2.4 19.5 1.0
O B:HOH399 2.5 28.7 1.0
O B:HOH313 2.5 17.2 1.0
MG B:MG200 3.5 18.1 1.0
O B:HOH338 3.5 18.1 1.0
NZ B:LYS119 3.9 20.7 1.0
OE1 B:GLU105 4.1 14.6 1.0
OD1 B:ASP115 4.1 19.2 1.0
OD2 B:ASP115 4.1 18.9 1.0
O B:HOH341 4.2 39.9 1.0
O B:HOH329 4.3 40.8 1.0
OD1 B:ASP79 4.4 19.1 1.0
OD2 B:ASP79 4.4 16.6 1.0
O B:HOH408 4.5 35.0 1.0
O B:GLN77 4.5 21.3 1.0
CG2 B:VAL31 4.5 51.9 1.0
O B:HOH333 4.5 19.5 1.0
OD1 B:ASN111 4.5 49.9 1.0
CG B:ASP115 4.6 19.8 1.0
OE1 B:GLU22 4.7 37.2 1.0
CG B:ASP79 4.7 19.2 1.0
O B:HOH429 4.8 49.6 1.0
CD B:GLU105 4.8 17.4 1.0
OE2 B:GLU22 5.0 25.5 1.0

Reference:

J.Abendroth, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Structure of An Uncharacterized Protein From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) To Be Published.
Page generated: Tue Oct 1 13:24:18 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy